PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P20590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 272aa    MW: 30500.2 Da    PI: 8.911
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P20590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.81.3e-42137213177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cq+egC+adls ak+yhrrh+vCe+hska+vv+v gl+qrfCqqCsrfh l efDe+krsCr+rLa+hn+rrrk+q
  GSMUA_Achr4P20590_001 137 RCQAEGCKADLSGAKHYHRRHRVCEFHSKATVVIVGGLQQRFCQQCSRFHVLAEFDEAKRSCRKRLADHNRRRRKPQ 213
                            6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-35133199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.112135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-40136216IPR004333Transcription factor, SBP-box
PfamPF031102.8E-32138211IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNNKSSSAEA FLPSMMSFSG LEGSSQKQHH IWDWETSSHN PNTTIPSTTY ELQDHAVFPC  60
VPLPDCPPPL LPMSNFHFYS PPPMPDYPVV LIKREDGTGG CGRIGLNLGH RTYFSSGDAL  120
AIDWQLSRST LNNHQPRCQA EGCKADLSGA KHYHRRHRVC EFHSKATVVI VGGLQQRFCQ  180
QCSRFHVLAE FDEAKRSCRK RLADHNRRRR KPQLPTTTTT ESSPSENTTT NSSEKATTDT  240
RKFRSSCSCN SLSHLGRLSS SHAFTTILKQ QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-301382111184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194211KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680529.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X2
TrEMBLM0SQM20.0M0SQM2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P20590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-48squamosa promoter binding protein-like 8