PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P19880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 249aa    MW: 27859.4 Da    PI: 5.4042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P19880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEde+lv  +   G  +W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr4P19880_001 14 KGPWSAEEDEKLVGFILANGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding44.43.9e-1471111547
                            -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +  E++l +d++++lG++ W++Ia++++ gRt++++k+ w+++
  GSMUA_Achr4P19880_001  71 SDVEEQLVIDLHARLGNR-WSKIAAMLP-GRTDNEIKNLWNTH 111
                            778***************.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-19562IPR009057Homeodomain-like
PROSITE profilePS5129412.002961IPR017930Myb domain
SuperFamilySSF466893.87E-2511108IPR009057Homeodomain-like
SMARTSM007172.8E-101363IPR001005SANT/Myb domain
PfamPF002497.8E-131461IPR001005SANT/Myb domain
CDDcd001672.36E-71661No hitNo description
PROSITE profilePS5129422.80462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2263116IPR009057Homeodomain-like
SMARTSM007172.6E-1166114IPR001005SANT/Myb domain
CDDcd001673.72E-971112No hitNo description
PfamPF002491.4E-1271111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRRPCCDKL GVKKGPWSAE EDEKLVGFIL ANGHCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLRRGLL SDVEEQLVID LHARLGNRWS KIAAMLPGRT DNEIKNLWNT HIKKKLLRRG  120
IDPVTHQLLD RQASPVASQS TVTTDSKSDA DQFQSPGNQG HIPSWDNKNP AEASSSAGSA  180
DPPLMNCLWE DDAPVLLEEL WQLPGNEDNY GAIAAAGQVP WDYEGCCEWL LDYQDFEEGD  240
VGSENLPRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398709.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX64e-85ODO1_PETHY; Protein ODORANT1
TrEMBLM0SQF10.0M0SQF1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P19880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.17e-81myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]