PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P19760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 280aa    MW: 30921.6 Da    PI: 7.0234
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P19760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.3e-36301212102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g
  GSMUA_Achr4P19760_001  30 FLTKTYQLVDDPSVDDMISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRG 108
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll++i+r+k 
  GSMUA_Achr4P19760_001 109 EKRLLCDIHRRKI 121
                            **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3823114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5826119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.56E-3527119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.8E-213053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-216880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-218193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.4E-4150178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAPPPLPSAA AEKAAEQVSP DGQRSLPTPF LTKTYQLVDD PSVDDMISWN EDGSTFVVWR  60
PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKIVPDRWEF ANDCFRRGEK RLLCDIHRRK  120
ITQAAPAVAG PAAVSVPVNR AGSPANSGEE QLTEENERLR KENTRLSREL AQMKSLCSHI  180
SVLISKYADE GGGGRAAEAP PPPARLFGVS IGGKRAREED KAEDPTPEVK SEPSDPASDT  240
KEDISPERHQ RSWVVYCPRP VRRACHGAEG GVGDRDGSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-273012229131Heat shock factor protein 1
5d5v_B9e-273012229131Heat shock factor protein 1
5d5v_D9e-273012229131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1065254e-73AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398726.11e-177PREDICTED: heat stress transcription factor B-2c-like
SwissprotQ6Z9C81e-89HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLM0SQD90.0M0SQD9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P19760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-71heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]