PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P19660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 318aa    MW: 33751 Da    PI: 9.2459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P19660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17138189155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + y+GVr++   grWv+e+r+p   +k+ r+++g+f ta++Aa+a++ a+  l+g
  GSMUA_Achr4P19660_001 138 PVYRGVRQRGAAGRWVCEVREP---NKKSRIWVGTFPTADMAARAHDVAAMMLRG 189
                            68****************9998...347***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-13138189IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-19139199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-29139199IPR001471AP2/ERF domain
PROSITE profilePS5103221.509139197IPR001471AP2/ERF domain
SMARTSM003807.5E-25139203IPR001471AP2/ERF domain
PRINTSPR003676.3E-5140151IPR001471AP2/ERF domain
CDDcd000186.71E-25140199No hitNo description
PRINTSPR003676.3E-5163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLSRVVRNWQ PSPTVPLESA CLARATKLTA NRQKCVKISS IPRKSKRATV PKKSVLDTCI  60
RGINLGSAAS FLDPAAEALP LTTPSPVPAA PGSDDSPHRP YGAASASGSR ETWSYPTVSQ  120
APPKRPAGRT KFRETRHPVY RGVRQRGAAG RWVCEVREPN KKSRIWVGTF PTADMAARAH  180
DVAAMMLRGR SACLNFADSA WRLRVPPSFS GPRDIARAAA EAAEAFRPPS DSNGDAKEGK  240
TSAAASSAAA TTSTMSPEED TGGGDAIDAM AYDDMDLGFG YYSGMAEGLL LVEPPPNGGC  300
NWDDVDAGAD VPLWSHSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398734.11e-156PREDICTED: dehydration-responsive element-binding protein 1G-like
SwissprotQ9FJ934e-63DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLM0SQC90.0M0SQC9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P19660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.19e-47C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]