PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P16590_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 343aa MW: 37751.7 Da PI: 8.3518

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P16590_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	83	142	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknkks+ GSMUA_Achr4P16590_001 83 HQGLKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPMGGGSRKNKKSK 142 6789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-23	85	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-33	85	140	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	86	140	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	88	124	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLSLSFDLHH SWREIKCYCH DFKLASCNTK RVPLILSLLA HLWLRSFLSS AASLSLSLSL 60 SLSLSLSLSL LESRLRVPLN PRHQGLKCPR CDSPNTKFCY YNNYSLSQPR HFCKTCRRYW 120 TKGGALRNVP MGGGSRKNKK SKSSASSRLP AAPLSGFPET GSSLKFLDGL PSSVAMDFQI 180 GLPAASGLHD PATSTVFNSN QFINFFLSSI NQDLHWKLQQ QRLAMIFGGE AHKQSSSPLE 240 IQQEFISFEV SDIATDEVCG CSESGNTCVA TGTNSSMAWL PESSNYTIPT STAISINSFG 300 NVDGNNSGDK SSTNFNISYW NGIPAWNDIP QFSTLPYSVD MEL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLSLSFDLHH SWREIKCYCH DFKLASCNTK RVPLILSLLA HLWLRSFLSS AASLSLSLSL  60
SLSLSLSLSL LESRLRVPLN PRHQGLKCPR CDSPNTKFCY YNNYSLSQPR HFCKTCRRYW  120
TKGGALRNVP MGGGSRKNKK SKSSASSRLP AAPLSGFPET GSSLKFLDGL PSSVAMDFQI  180
GLPAASGLHD PATSTVFNSN QFINFFLSSI NQDLHWKLQQ QRLAMIFGGE AHKQSSSPLE  240
IQQEFISFEV SDIATDEVCG CSESGNTCVA TGTNSSMAWL PESSNYTIPT STAISINSFG  300
NVDGNNSGDK SSTNFNISYW NGIPAWNDIP QFSTLPYSVD MEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947524	3e-43	EU947524.1 Zea mays clone 346044 mRNA sequence.
GenBank	KJ726977	3e-43	KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396904.1	1e-180	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	M0SPH3	0.0	M0SPH3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P16590_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-29	DOF zinc finger protein 1