PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P10590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 714aa    MW: 78540.1 Da    PI: 6.9662
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P10590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24158259199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F
  GSMUA_Achr4P10590_001 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKLQRP-SQELIAKDLHGMEWRFRHIYRGQPRRHLLTTGWSAFVNRKKLISGDAVLF 244
                            99****************************9977755.569*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+++++r+
  GSMUA_Achr4P10590_001 245 L--RGTDGELRLGIRRA 259
                            *..449999*****996 PP
2Auxin_resp116.52.3e-38285365282
             Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            a+a+st++vF+v+YnPra +s+F+v+++k++k++++++svG Rfkm +e++d+serr +G+v+g+sd+dpvrWp+SkWr+L
  GSMUA_Achr4P10590_001 285 ANAVSTRKVFHVYYNPRANSSDFIVPYWKFVKSFNSSISVGIRFKMIYESDDASERRSTGLVTGISDMDPVRWPGSKWRCL 365
                            799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-42152266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-39152267IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-22156258No hitNo description
PfamPF023627.8E-22158259IPR003340B3 DNA binding domain
SMARTSM010192.8E-23158260IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802158260IPR003340B3 DNA binding domain
PfamPF065072.4E-33285365IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MGIDLNTIEE EDEEPEHPAH AAPPPAAAAV EDAFQGTPVC LELWHACAGP RIWLPKKGSL  60
VVYLPQGHME HLGDGGGGGA DGGGRGGICR RDVPPHCLCR VIDVKLHADA ATDDVYAQLS  120
LLAESEDFER RMKMGEVEGN EEGDDVECIN RSSVPHMFCK TLTASDTSTH GGFSVPRRAA  180
EDCFPPLDYK LQRPSQELIA KDLHGMEWRF RHIYRGQPRR HLLTTGWSAF VNRKKLISGD  240
AVLFLRGTDG ELRLGIRRAV QFKSSNPVSA HPSGNSTLAT LADIANAVST RKVFHVYYNP  300
RANSSDFIVP YWKFVKSFNS SISVGIRFKM IYESDDASER RSTGLVTGIS DMDPVRWPGS  360
KWRCLLVNWD VDADTNQQNR ISPWEIEPTG SVSGSGSLST VGSKRAKIGL PSVNMDFPIP  420
NGNGCPDLRE SASIHKVLQG QEFMRLGRVR ISHGKSDSSF NRTGFSESIR FQKVLQGQEV  480
FSRNPPFLGA PCDAHVRNGV YGQFDDVLTS RAESRLPIAP HGYVTLLQQS LPSIQAFSPS  540
SVLMFQDASC VSLSAHSMPG MNYQDRGDEG CRFAMLNGSE PLHREESNFP SWPPTLACHF  600
ANQQCKMVKV HDPVLDGKLD FENERSVSRK GCRLFGFPLT ERIPVANLVD KPPPVTPATS  660
MPQMPAKPVG CSSALYALPF SCLVSDAFNS QLLCQCVRLY YLLSLCCSIL CSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1063939519361Auxin response factor 1
4ldy_B1e-1063939519361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395999.10.0PREDICTED: auxin response factor 15-like isoform X2
RefseqXP_009396000.10.0PREDICTED: auxin response factor 15-like isoform X2
RefseqXP_018681117.10.0PREDICTED: auxin response factor 15-like isoform X2
RefseqXP_018681118.10.0PREDICTED: auxin response factor 15-like isoform X2
RefseqXP_018681119.10.0PREDICTED: auxin response factor 15-like isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLM0SMS60.0M0SMS6_MUSAM; Auxin response factor
STRINGGSMUA_Achr4P10590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-167ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]