PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P10460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 298aa    MW: 31985.7 Da    PI: 6.7817
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P10460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.6e-18203237135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr4P10460_001 203 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 237
                            99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-7328285IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.466197233IPR000679Zinc finger, GATA-type
SMARTSM004016.4E-17197247IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.5E-15199234IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.8E-15200260No hitNo description
CDDcd002023.36E-14202249No hitNo description
PROSITE patternPS003440203228IPR000679Zinc finger, GATA-type
PfamPF003205.9E-16203237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEAADHFHGG FCRAGNPHCS PEKKAGGGGG GGAGDPFVVE DLFDFSNEEE EEDKAEVLAG  60
GREDDGAVGG NSTDSSTVTS VDSCSNSLFG LEPYFSGDLL YDELAELEWL SNFVEESSSE  120
DLHKLHLVSG VAHFRTEAPV PGKARSKRSR SAPCSWSSRL LVLSSSPESE FVGSPCGGGG  180
KKAVKKKDPP ADPGMAVTDG RKCLHCQTDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE  240
YRPAASPTFV VSKHSNSHRK VIELRRQKIL RHQLHQSAAP FDGPSNFLIP GPNIRHLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680169.10.0PREDICTED: GATA transcription factor 9-like isoform X2
RefseqXP_018680170.10.0PREDICTED: GATA transcription factor 9-like isoform X3
RefseqXP_018680171.10.0PREDICTED: GATA transcription factor 9-like isoform X4
SwissprotO826322e-70GATA9_ARATH; GATA transcription factor 9
TrEMBLM0SMR30.0M0SMR3_MUSAM; GATA transcription factor
STRINGGSMUA_Achr4P10460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-57GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]