PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P09130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 296aa    MW: 32414.9 Da    PI: 9.567
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P09130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           +++WT+eE+e l  +v ++G g W+tI +         +R+  ++k++w++
  GSMUA_Achr4P09130_001  5 KQKWTAEEEEALRAGVDKHGAGKWRTIQKDPEfsrclATRSNIDLKDKWRN 55
                           79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.086161IPR017930Myb domain
SuperFamilySSF466895.89E-16258IPR009057Homeodomain-like
SMARTSM007172.9E-8459IPR001005SANT/Myb domain
PfamPF002497.0E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-14556IPR009057Homeodomain-like
CDDcd116602.75E-21656No hitNo description
SMARTSM005261.5E-11111176IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.818113181IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-14114182IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.12E-13115185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.7E-10115176IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGAPKQKWTA EEEEALRAGV DKHGAGKWRT IQKDPEFSRC LATRSNIDLK DKWRNMSISA  60
SGQGSREKIR TPKAKVLPVI PPSGSQSLIV SAPHKDGVSA TADPTKSSQE AKLPPRYTVM  120
IIEALAAMKE PNGSEIGAIC SFIEQRHEVP QNFRRLLSSK LRRLVAQNKI ERVQKGYRLK  180
ESSFSIKTPT PKQKDPANHA RGHSGSAYSI DSIEEAAITA AYKIADSEAK SFLASEAVKE  240
AEKITKMAEE TESLLLLAKE IFERCAQGEA VTMLFDGLNV PSESNGNAHC QAPSLF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF5691741e-45HF569174.1 Saccharum officinarum mRNA for MYB-related protein (myb68 gene), cultivar Co86032.
GenBankHF6794261e-45HF679426.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB20 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395816.10.0PREDICTED: single myb histone 4
SwissprotQ6WLH42e-84SMH3_MAIZE; Single myb histone 3
TrEMBLM0SMD00.0M0SMD0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P09130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-66MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]