PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P08670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 276aa    MW: 30333.4 Da    PI: 10.0156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P08670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           +++WT+eE+e l  +v ++G g W+tI +         +R+  ++k++w++
  GSMUA_Achr4P08670_001  5 KQKWTAEEEEALRAGVDKHGAGKWRTIQKDPEfsrclATRSNIDLKDKWRN 55
                           79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.086161IPR017930Myb domain
SuperFamilySSF466897.53E-15258IPR009057Homeodomain-like
SMARTSM007172.9E-8459IPR001005SANT/Myb domain
PfamPF002496.3E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-14556IPR009057Homeodomain-like
CDDcd116606.30E-21656No hitNo description
Gene3DG3DSA:1.10.10.104.0E-14111188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.7E-11111176IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.133113181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466897.53E-15115146IPR009057Homeodomain-like
PfamPF005381.8E-9115176IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGAPKQKWTA EEEEALRAGV DKHGAGKWRT IQKDPEFSRC LATRSNIDLK DKWRNMSISA  60
SGQGSREKVR TPKAKGVPAT PVSGSQSLVV YVPHKDGAPA ISDPTKSSQE AKNPPRYTAM  120
IIEALASMQE PNGSEIGAIC SFIEQRHEVP QNFRRLLSSK LRRLVAQNKI EKVQKGYRLK  180
DSSYATKTPT PKQKDPANRA RVHQNSSSAN SIDPIEEAAI TAAYKVADSE AKSFLASEAV  240
KEAEKISKMA EETDSLLLLA KEIFERCSRG EIVTIA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395778.10.0PREDICTED: single myb histone 4
SwissprotQ6WLH43e-90SMH3_MAIZE; Single myb histone 3
TrEMBLM0SM840.0M0SM84_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P08670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-73MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]