PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P05890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 306aa    MW: 34340.6 Da    PI: 8.4738
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P05890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.91.1e-1724111186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +W++  vl+L+e+++++++  +r+klk+ +We++++ +    + ++  ++p+qCk+k+e ++kry+++ + + +  ++sss+++++ +
  GSMUA_Achr4P05890_001  24 EWSEGGVLCLLEVYESKWTLRNRAKLKGSDWEDIARLVsmrcSGTKALKTPTQCKNKIEAMKKRYRAESAAAHD--PNSSSSWQFYAR 109
                            5**********************************98777434444568******************9999998..899999****** PP

               trihelix  85 le 86 
                            ++
  GSMUA_Achr4P05890_001 110 MD 111
                            *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-1922113No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDDSRLLTCP DPAPRVTDKG KRDEWSEGGV LCLLEVYESK WTLRNRAKLK GSDWEDIARL  60
VSMRCSGTKA LKTPTQCKNK IEAMKKRYRA ESAAAHDPNS SSSWQFYARM DDLLKGTGNC  120
SVFPKANHDI DLQALPKAEA EVEADGHLHD SNHDDGSNSM PINMNANADN IDDKKMENRG  180
TDSNLSAPRG KKDATAEDGA RDPGSSSKRR RVTGSEVADS IRFLAQSMLQ IEQARMEMYK  240
DSERLRAEAE IKRGEMELKR TEIMASTQLQ IAKLFMKRIH QRSSKNQNPS LRSEIAILPR  300
RDGQGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207211KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395477.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLM0SLF60.0M0SLF6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.19e-64sequence-specific DNA binding transcription factors