PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P03170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 341aa    MW: 37639.4 Da    PI: 6.5114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P03170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-13174220455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er+RRdr+++ f eL +++P +     kK +K++ L  A++YI++L+
  GSMUA_Achr4P03170_001 174 DHVIAERKRRDRLKQQFLELSTIIPGL-----KKTDKVSLLGDAINYIRQLE 220
                            6999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16174233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11174220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.03E-12175224No hitNo description
SMARTSM003533.4E-14176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDKSSRQGPP DVQRQSSLQE SDHLSFIDQS EMISLDQFTV NQIMESLYEE FHDPLPSPNY  60
ASCLPFESSR SSDFNSASCS FADVSFGRPI VAVTGGDVSA ELPQASSSFL SFDNQDSLHD  120
PPQLCVNSAK GVVEPTNVIR SLIPRGSTWR ENTRDFQRPE RISMGSRPPS CAQDHVIAER  180
KRRDRLKQQF LELSTIIPGL KKTDKVSLLG DAINYIRQLE EKVKTLEEKA SEKTVASTNL  240
VEKSEHLRAC HHISSSEANP SSRAFPKVTA SLDGNSSILV RIQCEKRKGL FVKVLSEIEK  300
HHLSVVNTSA MPFAASSLNI AVTAQAMHLT LVLLDGTLTA I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395204.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLM0SKN40.0M0SKN4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P03170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-35bHLH family protein