PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P02750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 718aa    MW: 79863.9 Da    PI: 7.7609
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P02750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.9e-20153268199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE................EEETTEEEE-TTHHHH CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy..............rkksgryvltkGWkeF 68 
                            f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iy              r +++r++lt+GW+ F
  GSMUA_Achr4P02750_001 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKLQRP-SQELIAKDLHGTEWTFRHIYrgisnrskplllvfRCQPRRHLLTTGWSAF 239
                            99****************************9977755.569*****************888877777777777777779********* PP

                            HHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  69 vkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            v+ ++L +gD v+F   + +++el+++v+r+
  GSMUA_Achr4P02750_001 240 VNRKKLISGDAVLFL--RGNDGELRLGVRRA 268
                            ***************..4489999****996 PP
2Auxin_resp113.22.4e-37294374282
             Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            a+++s ++vF+++YnPra++s+F+v+++k++k++++ +svGmRf+m +e++d+ err +G+++g+sd+dp+rWp+SkWr+L
  GSMUA_Achr4P02750_001 294 ANSVSARKVFHIYYNPRATSSKFIVPYWKFLKSFNHLISVGMRFRMIYESDDATERRSTGLITGISDIDPIRWPHSKWRCL 374
                            78999***************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-35147276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-38147273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-19151267No hitNo description
PfamPF023629.6E-18153268IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083153269IPR003340B3 DNA binding domain
SMARTSM010193.3E-16153269IPR003340B3 DNA binding domain
PfamPF065074.0E-32294374IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MGIDLNTIDE EEEEPEQPAY HAASPPAATP VDRALQVTPV CLELWHACAG PRIWLPKKGS  60
LVVYFPQGHI EHFGEDGGRR GGVCRRDVPP HVFCLVVDVK LHADAATDEV YAQLSLLAES  120
EEFELRMKKG EVEGNEEDED VECISRSSVP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
PLDYKLQRPS QELIAKDLHG TEWTFRHIYR GISNRSKPLL LVFRCQPRRH LLTTGWSAFV  240
NRKKLISGDA VLFLRGNDGE LRLGVRRAAQ FKSGSPVSAH PSGNMNLATL TIIANSVSAR  300
KVFHIYYNPR ATSSKFIVPY WKFLKSFNHL ISVGMRFRMI YESDDATERR STGLITGISD  360
IDPIRWPHSK WRCLLPFHNK FSIAAEMRCS ACWQECICSL MQVNWDNDVD ANQQKRISPW  420
EIEPIGPVIG SGSSTTAGLK RAKITLPSVN MDFPIPNGNG CPDLRESASF HEVLQGQEVT  480
RLTPPICVVP HGKSDFSFNC TGFSESVGFQ KVLQGQEVFS KVPPFLGAGS DAHGRYGVYG  540
LFDGLHAYHT QSRLPAASLG YVTLVQQSLP SIQAFPPSSV LMFQEANSKN LLFQPMHSMN  600
CQDRGDNECY SAKLDGSKTK TLHREEANSP FRPATGRHFT NQQHKMVKVY APVLAGKSDL  660
ENEKSASRKG FRLFGFSLTE KIPVTNLVDP PPPVSQTKTD VKADIAFSTS MPQMCPLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-964042619356Auxin response factor 1
4ldy_B2e-964042619356Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394821.10.0PREDICTED: auxin response factor 2-like
RefseqXP_018681122.10.0PREDICTED: auxin response factor 2-like
TrEMBLM0SKJ20.0M0SKJ2_MUSAM; Auxin response factor
STRINGGSMUA_Achr4P02750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-158ARF family protein