PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P02630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 297aa    MW: 31277.6 Da    PI: 4.8739
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P02630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.6e-18191225135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  GSMUA_Achr4P02630_001 191 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 225
                            99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-17185235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347185221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-15186222IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.95E-15188248No hitNo description
CDDcd002025.12E-14190237No hitNo description
PfamPF003205.9E-16191225IPR000679Zinc finger, GATA-type
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEVPENCHGG FCRAGNPQCA PERKASGGGA GGDQFVVEDL LDFSNEEEEE EEAEALTGSS  60
TDSSTVTAVD SCSNSSSGPE PHPSSDIVCR SFADASLSGD LCEPYEELAE LEWLSNFVEE  120
SFSSEDLHKL HLISGANSTA SSTTAAAASG RADQVAPSEL IVPPGAAAGK KAARKKDPPA  180
AAAAAADGRK CLHCQTDKTP QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PAASPTFVVS  240
KHSNSHRKVL ELRRQKELQQ PQKQLLQAAS SGALYDAPTP VAAANFLIDG PDTRHLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394835.11e-172PREDICTED: GATA transcription factor 9-like isoform X2
SwissprotO826324e-67GATA9_ARATH; GATA transcription factor 9
TrEMBLM0SKI00.0M0SKI0_MUSAM; GATA transcription factor
STRINGGSMUA_Achr4P02630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-36GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]