PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P01600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 666aa    MW: 72652.3 Da    PI: 5.9992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P01600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41e-31299356260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            +DgynWrKYGqK+vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  GSMUA_Achr4P01600_001 299 EDGYNWRKYGQKQVKGSEYPRSYYKCTNPKCQVKKKVERSH-EGHITEIIYKGAHNHPK 356
                            8****************************************.***************85 PP
2WRKY102.72.1e-32458516159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k++er+++d k v++tYeg+Hnh+
  GSMUA_Achr4P01600_001 458 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHIERASHDLKSVITTYEGKHNHD 516
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.2E-24296357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-28296357IPR003657WRKY domain
SMARTSM007747.3E-35298356IPR003657WRKY domain
PfamPF031064.1E-24299355IPR003657WRKY domain
PROSITE profilePS5081123.158299357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-36443518IPR003657WRKY domain
SuperFamilySSF1182903.92E-28450518IPR003657WRKY domain
PROSITE profilePS5081137.895453518IPR003657WRKY domain
SMARTSM007744.0E-37458517IPR003657WRKY domain
PfamPF031061.9E-24459516IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAKTDDNNAM IDDRPPPNPS SRAFLSNSIN EEFGSKSFSD FLTENGNVGF RWTCENQKMG  60
INTKIEEAEA GNDFSNDASV QPKPFDAPKS CSAVGLAERM AARKGFNVPK LDTARIPPAT  120
IVSSSEICSP YLTIPPGLSP TMLLESPVFL ANCLAQPSPT TGKFNFADID SNPMSLSLSA  180
VSTKSDNDLF EDIPEAFSFK PPLESHSHLS STEEKVMLWM PGQTSHCKSC QFVSILILES  240
TQSVLYYILS TSRILAQLTH DKGFSDSIVG TDYAPTVDTQ QDGEADLREL SAAVGTPAED  300
GYNWRKYGQK QVKGSEYPRS YYKCTNPKCQ VKKKVERSHE GHITEIIYKG AHNHPKPHTS  360
RPPVAAEQCD PSNSLQQNQE GTHLSPEAIG VSSTMSNDEE EDDRATHGSV SLGCDGEGDE  420
TESKRRKLEA SAIEMSAASR AVREPRVVVQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRS  480
YYKCTNPGCT VRKHIERASH DLKSVITTYE GKHNHDVPVA RNSGQPSSAQ SNTTANAAPQ  540
HNGLLQRPEP TQDGFVRFDG HAALGTFGFP GREQLGQPSS FPFSMAQPGL ANLAIAGLGP  600
MAAAMKMPVV PPLHPYLSHL QLTEAGLMVP KLEPKEESMP DSELPVLNAA SIYHQMMSRL  660
PLGPQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37299518877Probable WRKY transcription factor 4
2lex_A6e-37299518877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394983.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
TrEMBLM0SK770.0M0SK77_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P01600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-154WRKY DNA-binding protein 2