PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P31350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 793aa    MW: 85850.4 Da    PI: 6.1817
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P31350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.2e-23206307199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F
  GSMUA_Achr3P31350_001 206 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHSMEWRFRHIYRGQPRRHLLTTGWSAFVNRKKLSSGDAVLF 292
                            99****************************963.3445679*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++ l+++v+r+
  GSMUA_Achr3P31350_001 293 L--RGNDGVLRLGVRRA 307
                            *..34788889999986 PP
2Auxin_resp115.45e-38332413182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +a+a+s+k++F+++YnPras+seF+v+++k++k+l++++s+GmRfk+ +e++d+ err +G+++g+sd+dpvrWp+SkW++L
  GSMUA_Achr3P31350_001 332 VADAVSNKKAFDIYYNPRASSSEFIVPYWKFVKSLNTSISAGMRFKILYEGDDATERRSTGLITGISDMDPVRWPGSKWKCL 413
                            6889*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-38201308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-41202311IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-20204306No hitNo description
SMARTSM010192.7E-22206308IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661206308IPR003340B3 DNA binding domain
PfamPF023629.1E-21206307IPR003340B3 DNA binding domain
PfamPF065073.2E-32333413IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MGGDKPGHCD DQSSPDFSLS LPHLPSDSCI DTEPAAARER ERERNPTPIS PSPTSGSSLS  60
WICLSVLGLL GSLGLGRMGI DLNTIEEEEE EPEQHPAHLA VSAAAAAEEA FQSASVCLEL  120
WHAEGGDGSG GRGGVGSGYD VPPHVFCRVV DVKLHADAAT DEVYAQLSLV VESEEFEGRP  180
KKGELEGDAE EEDVECISRT SIPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ  240
RPSQELVAKD LHSMEWRFRH IYRGQPRRHL LTTGWSAFVN RKKLSSGDAV LFLRGNDGVL  300
RLGVRRAAQF KGSGPVLEHQ SGNMNLLTLA AVADAVSNKK AFDIYYNPRA SSSEFIVPYW  360
KFVKSLNTSI SAGMRFKILY EGDDATERRS TGLITGISDM DPVRWPGSKW KCLLVNWDDD  420
MDANRQNRIS PWEIEPIGSV LGSGSLSTTG SKRAKICLPS VNMDFPIPNG NGCLDLRESA  480
SFHKVLQGQE FTRLRTPSNI GVTASHVSEI GNRQYSDGKG RCTGANSCIV GESVTRDRVR  540
TSYGADFSFN CTGFSEPVLF QKVLQGQEVF SKCPPFIGAR SDAHARNGVY GLFDRFHTSH  600
AESRLPPSSL GYVTIVQPSL PPIQASSPSS VLMFQEAGSR MSLVQSASST NGQDRGDGGC  660
YFSKLNGSEA LHQPEMDKVH ASVSDGKLGI GNEQNVNRNG CRLFGFSLTE KIPVANLADK  720
SLPVSPASTQ VKVDTAFSAS MPQMPAKPVG CSCTGVNAVY ALYIFPFGCS NSSLLFVTFC  780
YLTSLCCNIF SVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-90140435101388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394204.10.0PREDICTED: auxin response factor 15-like isoform X1
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLM0SJE90.0M0SJE9_MUSAM; Auxin response factor
STRINGGSMUA_Achr3P31350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-143ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]