PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P29760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 623aa    MW: 67346.6 Da    PI: 6.7807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P29760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07272292526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ G C++Gd C +aHg
  GSMUA_Achr3P29760_001 272 PCPDFRK-GACRRGDMCEYAHG 292
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002043.53E-1441166No hitNo description
SMARTSM0024819004474IPR002110Ankyrin repeat
SuperFamilySSF484031.71E-1549169IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1650169IPR020683Ankyrin repeat-containing domain
PfamPF127963.8E-952158IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.75191166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008591121IPR002110Ankyrin repeat
PROSITE profilePS5008811.407126161IPR002110Ankyrin repeat
SMARTSM002480.42126158IPR002110Ankyrin repeat
SMARTSM003564.0E-6267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4271294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582272294IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5272292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4300330IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.737302326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MCGGPGRLKS SASSSLSPSP TSQEEHQQRS LAAGMSRLTV EIDSFSLSLL ELAANNDVDA  60
LRLFLDRDPS AVDEVGLWYG RRKGSNRMVL EQRTPLMVAA TYGSLDVLKL ILSLPSVDVN  120
RVAGLDSTTA LHCAASGGSL EAVDAVKMLL AAGADPALVD ANGNRPADAI VVPPKLPDVK  180
TGLEQLLGRS TNASGGSDNH HHPLRKKEYP VDPSLPDIKN SIYSTDEFRM FSFKIRPCSR  240
AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP  300
AQYRTRLCKD GTGCSRRVCF FAHTNEELRP LYVSTGSAVP SPRSSSAAME MAAAMGLMPG  360
SPSSVSAVMS PFTPPMSPSA NGIGHSSASW PQPNVPTLTL PASNLQSSRL RSSLSARDMP  420
VDDLSVISET KALTPSNLDD LFSSEIASSP RYNSDQGSIF SPSHRTAVFN QFQQQQSLLS  480
PINTNVFPPK ARERQQQSLR SLSSRDLGPI SSPIVGSPVN SSWSKWASPS GVPDWGVNSE  540
ELGRLRRSSS FELRGNGEEP DLSWVHSLVR ESPTEKVVSV ATAPTGPTGG AECLNSNVEM  600
DGHDQAAVLG AWLEQMQLDQ IVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394397.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like isoform X2
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLM0SIZ20.0M0SIZ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]