PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr3P21610_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 224aa MW: 26309 Da PI: 8.4574 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.9e-05 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg sF+ + ++k+H+ +H GSMUA_Achr3P21610_001 40 HACQECGASFRKPAHMKQHMLSH 62 67*******************97 PP | |||||||
2 | zf-C2H2 | 18.3 | 6.3e-06 | 68 | 92 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rH tH GSMUA_Achr3P21610_001 68 FSCPvdDCHASYRRKDQLTRHSLTH 92 89*******************9998 PP | |||||||
3 | zf-C2H2 | 16.1 | 3.2e-05 | 134 | 152 | 1 | 17 |
EEET..TTTEEESSHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLk 17 y+C+ Cgk+F+ +s Lk GSMUA_Achr3P21610_001 134 YVCHepGCGKTFKYPSKLK 152 99**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-8 | 40 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0065 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.653 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.2E-9 | 53 | 94 | No hit | No description |
PROSITE profile | PS50157 | 9.66 | 68 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0056 | 68 | 92 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-9 | 69 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 25 | 97 | 122 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-7 | 128 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2 | 134 | 157 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 27 | 180 | 201 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MYFFKNLIRS HIVASHKFEL EETQSDEVQG INKVDCVMQH ACQECGASFR KPAHMKQHML 60 SHCIERPFSC PVDDCHASYR RKDQLTRHSL THQGGLFTFP VSNCNCKFGI KADMKRHMRE 120 IHEDDSSREG QKQYVCHEPG CGKTFKYPSK LKHEDTHGHI RFQIYLIFSH SHIRTCHQHV 180 DCEVCGTKQL RKNMKRHERK HEMNEMTDRT KCNIKGCECT FSNV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 1e-13 | 44 | 152 | 19 | 123 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 1e-13 | 44 | 152 | 19 | 123 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411993.1 | 1e-103 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-57 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | M0SGM7 | 1e-166 | M0SGM7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P21610_001 | 1e-166 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.2 | 4e-60 | transcription factor IIIA |