PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P19370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 367aa    MW: 41953 Da    PI: 7.0302
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P19370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.82.2e-2655136286
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            W ++e++ Li +rre++  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++k+       +++y+++l+
  GSMUA_Achr3P19370_001  55 WAQEETRSLISFRREIDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQSKGS-GLG--KMSYYKELD 136
                            ******************************************************************9984.333..589999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-445116IPR009057Homeodomain-like
PROSITE profilePS500908.64147111IPR017877Myb-like domain
SMARTSM007170.002451113IPR001005SANT/Myb domain
CDDcd122038.07E-2853118No hitNo description
PfamPF138371.3E-2154138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYLAEKPRNV DFYDTGGLPP QQQQQQQHPQ QQMHLAESSG DDHEVKAPKK RAETWAQEET  60
RSLISFRREI DGLFNTSKSN KHLWEQISAK MREKGFDRSP TMCTDKWRNL LKEFKKAKHQ  120
SKGSGLGKMS YYKELDELLK ERNKKATFKS SGAPKIDTFL HFSDKGLEDA NTPFGSVEAS  180
GRSPLNLDRP MEHDRHPLAI TAVDAVAANS VPPWNWRDAS VNDNNASYGG RVILVKWEDY  240
SRRIGIDGTA EAIKEAIKSA FGLRTKRAFW LEDEDNVVRS LDRDMPLGSY TLHLDEGITI  300
KACTYDDTDR MPVRTEEKTL YTEDDLRDFL SRRGWVGLRE LSGFKNVDTL DDLRSGAMYQ  360
GVRSLID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-4749134186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393773.10.0PREDICTED: trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX531e-167TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLM0SG030.0M0SG03_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P19370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-166Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]