PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P19160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 310aa    MW: 36442.1 Da    PI: 7.5463
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P19160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.92.4e-22296185
               trihelix  1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80
                           +Wt+ +v++Li+++++++e+  +++         +kk++ +++sk+m+erg+ +sp+qC++k+++lnkrykk++++ +++ +s+++++ +
  GSMUA_Achr3P19160_001  2 KWTDAMVRLLITVVSYVGEDNASESsgrrkyvilQKKGKRKAISKAMAERGCYVSPQQCEDKFNDLNKRYKKLTDILGRGtSSRVVENPA 91
                           7**************9998887654567789999**********************************************4577788888 PP

               trihelix 81 yfdql 85
                           ++d++
  GSMUA_Achr3P19160_001 92 LLDHI 96
                           87776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-192123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKWTDAMVRL LITVVSYVGE DNASESSGRR KYVILQKKGK RKAISKAMAE RGCYVSPQQC  60
EDKFNDLNKR YKKLTDILGR GTSSRVVENP ALLDHISNVS EKMKDDVRKI LSSKHLFYEE  120
MCSYHNCNRL NLPADPALQR SLQLALRRRG EHDARRDSHE DVDEDDQSAD SDDEEGDAEE  180
HNTLHGDLVA SCFPKRMKNG VSHEDYFQKD PIQQHWVNSY PLQLEEKRLQ IQAQMLELEK  240
QCYKWHRFSK KKDRELNMMR MENERMKLEN EHMSLELRQK EIELDLTSKR ISEWCKCRTS  300
ETRSKSPSQD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403682.11e-162PREDICTED: uncharacterized protein LOC103987182
RefseqXP_018683165.11e-162PREDICTED: uncharacterized protein LOC103987182
TrEMBLM0SFY20.0M0SFY2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P19160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-76sequence-specific DNA binding transcription factors