PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P15190_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 26200.6 Da PI: 9.0952 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k GSMUA_Achr3P15190_001 89 RKKLRLTKEQSALLEDRFKEHSTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTK 143 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.5 | 2.3e-40 | 89 | 178 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ GSMUA_Achr3P15190_001 89 RKKLRLTKEQSALLEDRFKEHSTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLHKELQELK 176 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +l GSMUA_Achr3P15190_001 177 -AL 178 .55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 71 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-19 | 77 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.8E-16 | 87 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.62E-16 | 88 | 146 | No hit | No description |
Pfam | PF00046 | 5.6E-16 | 89 | 143 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.4E-11 | 145 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.4E-24 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAQKQPSLML SLPHDVYNGE ANKGSEEGRQ ARPSSPHSTV SSFSTAYTPT TMKKEKDDGG 60 SGGGGEEADT ARADSRGGSY DDNDDGSPRK KLRLTKEQSA LLEDRFKEHS TLNPKQKHAL 120 AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKRCCES LTDENRRLHK ELQELKALKL 180 APPPVCMQFP AATLTMCPSC KTIRAAADGP KGGGAEPFVV APAKHHFFHP FIHSASC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392387.1 | 1e-177 | PREDICTED: homeobox-leucine zipper protein HOX19 | ||||
Refseq | XP_018679592.1 | 1e-177 | PREDICTED: homeobox-leucine zipper protein HOX19 | ||||
Refseq | XP_018679593.1 | 1e-177 | PREDICTED: homeobox-leucine zipper protein HOX19 | ||||
Swissprot | A2XE76 | 7e-78 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 7e-78 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | M0SET5 | 1e-176 | M0SET5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P15190_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-62 | HD-ZIP family protein |