PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P14720_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 289aa MW: 33350.8 Da PI: 4.8953

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P14720_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.9	8.8e-49	11	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPt+eel+++yL++kv+gk+l+l e+i++v++y+++Pw+Lp +k +e+ewyf+++rd+++++g r++r+t++g+Wkatg d GSMUA_Achr3P14720_001 11 LPGFRFHPTEEELLDFYLRRKVQGKRLQL-EIIATVNLYRHDPWELPGLAKMGETEWYFYVPRDRRQTSGGRPSRTTERGFWKATGCD 97 69*************************.99***********8888899****************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s+ ++l+glkktLvfy+grap+g+ktdWvm+eyrl GSMUA_Achr3P14720_001 98 RPVRSAadPKRLIGLKKTLVFYEGRAPRGTKTDWVMNEYRL 138 98777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-56	9	163	IPR003441	NAC domain
PROSITE profile	PS51005	55.534	10	163	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEIRSTLEMY LPGFRFHPTE EELLDFYLRR KVQGKRLQLE IIATVNLYRH DPWELPGLAK 60 MGETEWYFYV PRDRRQTSGG RPSRTTERGF WKATGCDRPV RSAADPKRLI GLKKTLVFYE 120 GRAPRGTKTD WVMNEYRLPD PSATSSDGPP KEENMVLCKI HRKATSMKVL EQRAAAMEED 180 TTMSQNSSST AESASDYDQE SFLKSMVKED VVIVIEDATE EEVTTVVVVE EEKEEADVAA 240 VSTRQRPSLP ELEVPKKEGL EWLQDPFWTQ LRSPWMDLWS PYLATMLNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-50	12	168	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-50	12	168	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-50	12	168	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-50	12	168	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-50	12	168	22	173	NAC domain-containing protein 19
3swm_B	3e-50	12	168	22	173	NAC domain-containing protein 19
3swm_C	3e-50	12	168	22	173	NAC domain-containing protein 19
3swm_D	3e-50	12	168	22	173	NAC domain-containing protein 19
3swp_A	3e-50	12	168	22	173	NAC domain-containing protein 19
3swp_B	3e-50	12	168	22	173	NAC domain-containing protein 19
3swp_C	3e-50	12	168	22	173	NAC domain-containing protein 19
3swp_D	3e-50	12	168	22	173	NAC domain-containing protein 19
4dul_A	3e-50	12	168	19	170	NAC domain-containing protein 19
4dul_B	3e-50	12	168	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287689	2e-53	AK287689.1 Oryza sativa Japonica Group cDNA, clone: J065128D10, full insert sequence.
GenBank	AP003685	2e-53	AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04.
GenBank	AP004685	2e-53	AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10.
GenBank	AP014962	2e-53	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	2e-53	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CU406703	2e-53	CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392340.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	1e-105	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M0SEN8	0.0	M0SEN8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P14720_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-81	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]