PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P13830_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 272aa MW: 29806.2 Da PI: 7.8747

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P13830_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129.1	1.2e-40	31	92	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e++lkcprC+stntkfCyynnyslsqPr+fCk+CrryWtkGG+lrnvPvGgg+rknkksss GSMUA_Achr3P13830_001 31 PEQSLKCPRCESTNTKFCYYNNYSLSQPRHFCKGCRRYWTKGGSLRNVPVGGGCRKNKKSSS 92 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	33	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-25	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MASLPLEGTL TGCQNLQRQQ QQQERKVRPQ PEQSLKCPRC ESTNTKFCYY NNYSLSQPRH 60 FCKGCRRYWT KGGSLRNVPV GGGCRKNKKS SSKRPQHQSF TTISNPPLLA YDPSGLSLAL 120 ASLQKQHHDP GRSLDDHETF LLGNPILDDP TAPPAGFLDM MRTGFLDGTT DYSSSFHNLY 180 CGYGGNGSTD VEVGLPFGGG LGGATTTTAT TVTTTSQLSC RDLDREEDKM LVGLQWQVGG 240 DCNMALDSTR DHCSWNGTVG SNWHSLINSS LM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678732.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like isoform X3
TrEMBL	M0SEF0	0.0	M0SEF0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P13830_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	5e-35	Dof family protein