PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P12730_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 175aa MW: 20303.5 Da PI: 10.7005

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P12730_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	66.9	3.7e-21	6	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WTteEd+ l+++v+q+G g+W++ ar+ g++Rt+k+c++rw++yl GSMUA_Achr3P12730_001 6 RGPWTTEEDLVLIKYVAQHGEGRWNALARCAGLKRTGKSCRLRWLNYL 53 89********************************************97 PP
2	Myb_DNA-binding	55	1.9e-17	59	102	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ GSMUA_Achr3P12730_001 59 RGNITPEEQLLILDLHSRWGNR-WSKIAQCLP-GRTDNEIKNYWRT 102 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.057	1	57	IPR017930	Myb domain
SuperFamily	SSF46689	5.08E-32	4	100	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-16	5	55	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-18	6	53	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-25	7	60	IPR009057	Homeodomain-like
CDD	cd00167	1.16E-12	8	53	No hit	No description
PROSITE profile	PS51294	18.292	58	108	IPR017930	Myb domain
SMART	SM00717	1.3E-14	58	106	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-15	59	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-23	61	106	IPR009057	Homeodomain-like
CDD	cd00167	2.37E-11	63	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEEIRRGPWT TEEDLVLIKY VAQHGEGRWN ALARCAGLKR TGKSCRLRWL NYLRPDVRRG 60 NITPEEQLLI LDLHSRWGNR WSKIAQCLPG RTDNEIKNYW RTRIITRLVE KCRQEAVHRP 120 CCFPSRRVGL SRSLSDVSTQ LSILEVFAGR QRAVGVESLL VRSPGRTTAY SIYVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-27	3	102	1	99	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-27	3	102	24	122	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678926.1	5e-71	PREDICTED: transcription factor MYB108-like
Swissprot	P81391	1e-63	MYB05_ANTMA; Myb-related protein 305
TrEMBL	M0SE40	1e-124	M0SE40_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P12730_001	1e-125	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	3e-65	myb domain protein 24

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]