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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSMUA_Achr3P12320_001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family | TCP | ||||||||
| Protein Properties | Length: 202aa MW: 20920.3 Da PI: 4.1881 | ||||||||
| Description | TCP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | TCP | 75.7 | 1.3e-23 | 1 | 50 | 24 | 73 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73
++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++
GSMUA_Achr3P12320_001 1 MPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIAT 50
9*****************************************77777333 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03634 | 4.2E-18 | 1 | 54 | IPR005333 | Transcription factor, TCP |
| PROSITE profile | PS51369 | 20.428 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 202 aa Download sequence Send to blast |
MPAACAARIF QLTRELGHKS DGETIRWLLQ HAEPAIIAAT GTGTVPAIAT VVDGAIKIPT 60 EAPSSSSAGL TAVTAFYPVQ DPLLQGALWM LPQPTAMVEP SGQAQIWTFP AASQIINLGG 120 PHPMAATAVY PGAAPGPNVA TAAGGGEPRT NEQAVTSTDG KKQELQLMGG ARGRRRDALL 180 ETEEESESDA EEEPPSESDA ED |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009391944.1 | 1e-113 | PREDICTED: transcription factor PCF2-like | ||||
| TrEMBL | M0SDZ9 | 1e-142 | M0SDZ9_MUSAM; Uncharacterized protein | ||||
| STRING | GSMUA_Achr3P12320_001 | 1e-143 | (Musa acuminata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3912 | 31 | 67 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G45680.1 | 2e-31 | TCP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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