PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P10240_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 620aa MW: 69463.1 Da PI: 7.6146 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.2e-23 | 150 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae++ ++++++ +l+++d++ sW++++i+r++++r++lt+GW+ Fv ++L +gD+v+ GSMUA_Achr3P10240_001 150 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVVKDLHDVSWTFRHIFRGQPKRHLLTTGWSVFVGTKRLSAGDSVL 235 99*****************************96555544..8********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++ +l+++++r+ GSMUA_Achr3P10240_001 236 FI--RDEKLQLLFGMRRA 251 **..5699999**99997 PP | |||||||
2 | Auxin_resp | 120.1 | 1.7e-39 | 276 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++ nPras+seFv++++k++ka++++vs+GmRf+m+fetedss rr++Gtv+g+sdldpvrW+nS+W +L+ GSMUA_Achr3P10240_001 276 AAHAATNNSPFTIFCNPRASPSEFVIPFAKYNKAMYTQVSLGMRFRMMFETEDSSVRRYMGTVTGISDLDPVRWKNSQWHNLQ 358 79******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.05E-43 | 140 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-40 | 143 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.69E-20 | 149 | 241 | No hit | No description |
SMART | SM01019 | 3.4E-22 | 150 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-21 | 150 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-34 | 276 | 358 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MDKILFIIHE NKYKTYKIIQ HVDHFYKSIP PWRVPHPLKP QGIIDSELWH ACAGPLVSLP 60 PVGSLVVYFP QGHSEQVAAS MQKEINDIPK YPSLPSKLIC VLLDVTMHAD AETDEVYAQM 120 TLQPVNKYDR EAMLASEMGL KQNKHPAEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD 180 FTMQPPAQEL VVKDLHDVSW TFRHIFRGQP KRHLLTTGWS VFVGTKRLSA GDSVLFIRDE 240 KLQLLFGMRR ANRQQPALSS SVLSSDSMHI GILAAAAHAA TNNSPFTIFC NPRASPSEFV 300 IPFAKYNKAM YTQVSLGMRF RMMFETEDSS VRRYMGTVTG ISDLDPVRWK NSQWHNLQVG 360 WDESTATERR TRVSIWEIEP LATPFYLCPP PFFRRNFPEA PGVPDAHEVE NAFQRVMPWL 420 NDDYGIKDTQ SALFPGLSLV QWMSMQQNHQ LMTPAAQPAH FPSAIASALQ NGLLLPQASA 480 SHHVQLPPLQ QKSINLQQQQ FQQQEQGQLQ QPQSQPQPQQ LRPVAVQEAA DHQLMQHQTS 540 SGQIVSQTHS SSQHLQPSLL QLQELQSSST IALSAQSIIA ISVAAASSST KSAVSRAAGF 600 TTAVFTQWDQ GSIFIELSFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 43 | 379 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018679145.1 | 0.0 | PREDICTED: auxin response factor 16-like isoform X2 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | M0SDE1 | 0.0 | M0SDE1_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr3P10240_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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