PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P09520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 318aa MW: 36094.1 Da PI: 7.0135

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P09520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.3	1.5e-53	8	135	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++y +k+ ++ ++ ++i evd++k+ePwdLp+k+k + ke+yfF+++d+ky+tg r+nrat++gyWkatgk GSMUA_Achr3P09520_001 8 LPPGFRFHPTDEEIITHYVMQKIINHCYTA-RAIGEVDLNKCEPWDLPSKAKMGGKEMYFFCQKDRKYPTGMRTNRATEAGYWKATGK 94 79********************999888.89***********999999****************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ kg l+g+kktLvfykgrap+g +t+Wvmhe+rle GSMUA_Achr3P09520_001 95 DKEICRGKGVLIGMKKTLVFYKGRAPRGDRTNWVMHEFRLE 135 **9*****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-61	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	56.812	8	159	IPR003441	NAC domain
Pfam	PF02365	4.3E-27	9	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MVDDCWDLPP GFRFHPTDEE IITHYVMQKI INHCYTARAI GEVDLNKCEP WDLPSKAKMG 60 GKEMYFFCQK DRKYPTGMRT NRATEAGYWK ATGKDKEICR GKGVLIGMKK TLVFYKGRAP 120 RGDRTNWVMH EFRLEGKYPL SNLPNSAKDE WVVCRVFYKH AGLKKSSPPA INSNGDDLKD 180 FSALPPLMDP PCMDSNMRPD SSFIHHDQLY DFKAIPPAFF TAMAAEDQQV MNHQMSSSNP 240 PQNSVLHYPL LVSAKPGYLH HDEAMPSEVA AAAMRKHCQS IGCPSQETGV STDHNTEISS 300 IMSKHYEDFE EPWASFGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-50	8	165	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-50	8	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-50	8	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-50	8	165	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-50	8	165	20	174	NAC domain-containing protein 19
3swm_B	5e-50	8	165	20	174	NAC domain-containing protein 19
3swm_C	5e-50	8	165	20	174	NAC domain-containing protein 19
3swm_D	5e-50	8	165	20	174	NAC domain-containing protein 19
3swp_A	5e-50	8	165	20	174	NAC domain-containing protein 19
3swp_B	5e-50	8	165	20	174	NAC domain-containing protein 19
3swp_C	5e-50	8	165	20	174	NAC domain-containing protein 19
3swp_D	5e-50	8	165	20	174	NAC domain-containing protein 19
4dul_A	5e-50	8	165	17	171	NAC domain-containing protein 19
4dul_B	5e-50	8	165	17	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391646.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	3e-98	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	M0SD69	0.0	M0SD69_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P09520_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-101	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]