PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P09460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 320aa    MW: 35056.6 Da    PI: 7.4991
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P09460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.82.5e-152888257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           r+R+t+++eq+ +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  GSMUA_Achr3P09460_001 28 RSRWTPKPEQVLILESIFNSgMVNPPKEETVRIRKLLekfgAVADANVFYWFQNRRSRSRR 88
                           89*****************99*************************************997 PP
2Wus_type_Homeobox105.92.5e-342790265
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                           +r+RWtP+peQ+ iLe++++sG+++P+kee+ ri++ Le++G++ d+NVfyWFQNr++R+r++q
  GSMUA_Achr3P09460_001 27 VRSRWTPKPEQVLILESIFNSGMVNPPKEETVRIRKLLEKFGAVADANVFYWFQNRRSRSRRRQ 90
                           589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.3862489IPR001356Homeobox domain
SuperFamilySSF466891.45E-132594IPR009057Homeodomain-like
SMARTSM003896.8E-62693IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.3E-92893IPR009057Homeodomain-like
PfamPF000464.4E-132888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDIEQTQDGK SSLNSGSNPD HAVVEPVRSR WTPKPEQVLI LESIFNSGMV NPPKEETVRI  60
RKLLEKFGAV ADANVFYWFQ NRRSRSRRRQ RQLQAGLAAD PGAAAAASCH FGTAVLQEPA  120
SSCSFVTSPS SSTGGFFPSS SYASSCSSSS YASFVGGDSV DDLFSISRHM GIAKSTQNPF  180
ECCSSDAPQL QYQPGTIVVF INGVLSEVPR GAFDLRAMFG HNVMLVHSSG ELLPVNEYGF  240
LMQSLQMGES YFLVRRSPSS LTPCNTLLFP FLSLSIYLYP SFEVCMTNPI SHLSFVAGFF  300
TYLARLPLHL PWPRGGSSYH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391639.10.0PREDICTED: WUSCHEL-related homeobox 11-like isoform X2
SwissprotB8B6445e-63WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I75e-63WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLM0SD630.0M0SD63_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P09460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-33WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]