PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CAMTA
Protein Properties Length: 979aa    MW: 109211 Da    PI: 8.0658
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.33.9e-55201353117
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e k+rwl+++ei++iL n+++++lt +++ +p+ gsl+L++rk +ryfrkDG++w+kk+dgktvrE+hekLK g+v+vl+cyYah+e
  GSMUA_Achr3P08460_001  20 QEaKSRWLRPSEICEILRNYQRFNLTPDPPYKPPGGSLFLFDRKALRYFRKDGHNWRKKRDGKTVREAHEKLKCGSVDVLHCYYAHGE 107
                            5559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                            +n++fqrr+yw+L+ +le+ivlvhy++v
  GSMUA_Achr3P08460_001 108 DNENFQRRSYWMLDGQLEHIVLVHYRDV 135
                            **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.60615141IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7818136IPR005559CG-1 DNA-binding domain
PfamPF038592.5E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.0E-7414503IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.8E-17415501IPR014756Immunoglobulin E-set
PfamPF018331.9E-6415500IPR002909IPT domain
CDDcd001022.07E-5415502No hitNo description
SuperFamilySSF484034.01E-15599710IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.1E-15604710IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.202604719IPR020683Ankyrin repeat-containing domain
CDDcd002049.90E-13604707No hitNo description
SMARTSM002480.55648677IPR002110Ankyrin repeat
PROSITE profilePS500889.057648680IPR002110Ankyrin repeat
SMARTSM00248650687716IPR002110Ankyrin repeat
PROSITE profilePS500966.925770799IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.02E-7806874IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.6823845IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.498824853IPR000048IQ motif, EF-hand binding site
PfamPF006120.0025825844IPR000048IQ motif, EF-hand binding site
SMARTSM000154.4E-4846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.743847875IPR000048IQ motif, EF-hand binding site
PfamPF006123.4E-5849868IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 979 aa     Download sequence    Send to blast
MAEGRRYALN PQLDIAQILQ EAKSRWLRPS EICEILRNYQ RFNLTPDPPY KPPGGSLFLF  60
DRKALRYFRK DGHNWRKKRD GKTVREAHEK LKCGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYRDVNEGSR STIPHLLNTD AMRMSHTDGS QTSSAVSPSS EFEDAESGEE  180
HSEASLADSL SHSGIHVASS ANHTGQENVA GCSGSLAHLR SSDSIDTGIL GRLFGPSSAN  240
QVPLQNLILG EDQQKNCSLG GASFDHHTAA SKMPEFFNIS RKDSGMLEEN VSIEQAKWSV  300
NMPKIFPNTT SEGNEVKVEN SENISNLDHG HLVDIPGYMF QVPNTNLSQS TLQTINNGSS  360
KVTVASDQPL SYEAQILYGL KKSLENEGDL KKLDSFGRWM SKEIGPSLSQ EQLFTIHDFS  420
PDWAFSGIET KVLIAGTFLG SVEPRSIKWS CMFGEFEVSA EVLTSNVIRC KAPLHTPGRV  480
PFYITCSNRI ACSEIREFEY RENFSSFSSV PERDLEEVIL QVRFAKLLST GLDRNWLVCS  540
VENCEKCFLK QKLLLMLRDQ ENEWNVIDKD SKAFHSDLRI PKDGLIQKLL KGKLYEWLLC  600
KVHEEGKGPN VLDENGQGAI HLAAALGYEW AMSPIVCAGV SPSFRDVIGR TGLHWAAYFG  660
REETVVELVR LGAAAGAVEH PTSKVPAGKT AADLASSRGH KGIAGYLAEA DLTSHLSSLT  720
VKESEMGRLS ATLAAEKAIE NVQEQNTVSL DGGNGEQLSL RGSLAAVRNS AQAAARIQAA  780
FRLHSFRQRK LTDSKDKDTE ISVDLMVRSY LNKFPKINHY NESLHMAAVK IQQKYRGWKG  840
RKEFLKIRDR IVKIQAHVRG HQVRKQYKKV VWSVSIVEKA ILRWRRKGAG LRGFRAENTT  900
ICIEGKVGAT DEYDFLRLGR RQKVASVEKA LARVQSMARH PEGRDQYMRL VACSRKSKLG  960
DEGGGSAQLQ NTEEENGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391526.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X1
TrEMBLM0SCW30.0M0SCW3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein