PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P08170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20788.6 Da PI: 9.4689 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 52 | 100 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+W+AeIrdp+ + r++lg+f taeeAa+a+++ +++++g GSMUA_Achr3P08170_001 52 YRGIRHRP-WGKWAAEIRDPV----KgVRVWLGTFATAEEAARAYDREARRIRG 100 9****888.**********75....44************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-22 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.288 | 51 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 51 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-35 | 51 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 52 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.39E-29 | 52 | 107 | No hit | No description |
PRINTS | PR00367 | 1.8E-11 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MCGGAIISDL ISPRDNTHRP STSVFWPDCT DCHCIPPPLE KVQRKRERKN LYRGIRHRPW 60 GKWAAEIRDP VKGVRVWLGT FATAEEAARA YDREARRIRG KKAKVNFPND DPLPNPPRRR 120 PAATVSSYEA RWLSDQPTTA AAHASYTMNL YEVPYMESVV PSTGPPGMEM LWSFDDVTPS 180 SAPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 52 | 108 | 6 | 63 | ATERF1 |
3gcc_A | 8e-22 | 52 | 108 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391493.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | M0SCT4 | 1e-133 | M0SCT4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P08170_001 | 1e-134 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-27 | ERF family protein |