PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P06660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 186aa    MW: 20628.5 Da    PI: 6.3502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P06660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12250455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +h ++Er+RR+ +N+ ++ Lr+l+P +   ++++ + a+i+  A++++k+L+
  GSMUA_Achr3P06660_001  2 THIAVERNRRKLMNEYLAVLRSLMPAS---YAQRGDQASIVGGAINFVKELE 50
                           8**************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.291149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.18E-11154No hitNo description
Gene3DG3DSA:4.10.280.102.0E-12261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-9455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTHIAVERNR RKLMNEYLAV LRSLMPASYA QRGDQASIVG GAINFVKELE HLVQSLEARK  60
RIRGRSQAAP FADFFTFPQY SSSPSSTASD GSTGDAVADI EVTIFESHAN IKIFSRWRPR  120
QLLELVLGLQ GLRLTTLHLN VTTVDEMVLY CFSLKVEDDC QCTSVDVIAT AVHQIIVSVE  180
AEAAQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763ARKRIRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391332.11e-134PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLM0SCD31e-135M0SCD3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P06660_0011e-136(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.15e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]