PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P05460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 973aa    MW: 109157 Da    PI: 6.9932
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P05460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91.1e-19128215183
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       + +++  ++l  +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  GSMUA_Achr3P05460_001 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELEARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVL 213
                            99*****************************954.4444.38********************************************** PP

                            EE CS
                     B3  82 Fk 83 
                            F 
  GSMUA_Achr3P05460_001 214 FI 215
                            *7 PP
2Auxin_resp120.31.5e-39274357183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  GSMUA_Achr3P05460_001 274 AAHAAANHSPFTIFYNPRASPSEFVIPFAKYQKAVYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 357
                            79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-38118277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-35121262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-17127214No hitNo description
PfamPF023621.1E-17128215IPR003340B3 DNA binding domain
PROSITE profilePS508639.869128227IPR003340B3 DNA binding domain
SMARTSM010193.5E-16128234IPR003340B3 DNA binding domain
PfamPF065072.4E-34274357IPR010525Auxin response factor
PfamPF023099.5E-9838925IPR033389AUX/IAA domain
PROSITE profilePS5174528.384840924IPR000270PB1 domain
SuperFamilySSF542774.22E-7857918No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MKAAAHGAAA PNPCEGERKT INPELWYACA GPLVTVPPVG SLVVYFPQGH SEQVAASMQR  60
DIDAHIPNYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVNSYDKEA LQASELALKQ  120
TRPQTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELEA RDLHDNLWTF  180
RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFISQKIK ILVKAYVFLI HYLMCRDQKQ  240
QLLLGIRRAN RQPTNIQSSV LSTDSMHIGI LAAAAHAAAN HSPFTIFYNP RASPSEFVIP  300
FAKYQKAVYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW  360
DESAAGERRN RVSIWEIEPV VAPFFICPPP FFRKRPRQPG MPDDESSEME NLFKRAMPWL  420
GEEICIKDSQ TQNTIMPGLS LVQWMNMQQN PSLANQTLQT EYLRSLTGPV MQNLGPTDIS  480
RQLGLQAQML QQNNIQFNTG RLPQQGQQVD EHAKVSVPLN QVSAVSRAPQ QMQDPSMQQK  540
QQLVNQALPV NQTQNNIIQP QALVQTQVQP QQQQQQQPPM IQNNQLLLQT LQQQQQQQQS  600
LFSQPRTQQP QLPQVQEYQR TLPDVPQQLS NSHSLLQQSV IPQQCAKPTS QSVRLPQPLQ  660
NQSQQKPQQP QVLIRAQSGV TDDIPSCSTS PSANNGMILP HAILNRNEHR NPMSTEKTSK  720
SPSLLRDAPP DGDVPGTDPR NNVLFGVNIE GSMGMPLATD TLLVNNIDSG KYQNHIPGDL  780
VANYNTSKDA QQELSSSMVS QSFGVPDMAF NSIDSTINDS ALLNRNSFAP APPPPLQRMR  840
TYTKVYKRGA VGRSIDIARY SGYDELKHDL ARMFSIEGQL EDRQRIGWKL VYVDHENDVL  900
LVGDDPWEEF VNCVRCIKIL SPQEVQQMSL DVDLGNNNLP NQACSSSDGG NVWRGHCDQN  960
SGNPSAGSYD HFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641637845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390465.10.0PREDICTED: auxin response factor 19 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0SC140.0M0SC14_MUSAM; Auxin response factor
STRINGGSMUA_Achr3P05460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19