PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P00180_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 13337 Da PI: 10.3014 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 6.1e-09 | 43 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + q++++++ + GSMUA_Achr3P00180_001 43 AWTRQEEENFFNALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 85 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.76E-12 | 27 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 37 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.694 | 39 | 90 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-5 | 40 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.07E-6 | 43 | 86 | No hit | No description |
Pfam | PF00249 | 7.7E-7 | 43 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MENQTSPTEN LLINNANNTS PSSSSMCTDT QNPVKKPTRQ WAAWTRQEEE NFFNALRQVG 60 KNFEKITCRV QSKNKDQVRH YYYRLVRRMN KLLGPGFCFD AKNSKDTNAA MLRW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391059.1 | 2e-76 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_009391060.1 | 2e-76 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_009391061.1 | 2e-76 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_009391062.1 | 1e-76 | PREDICTED: TSL-kinase interacting protein 1 isoform X2 | ||||
Refseq | XP_018679681.1 | 2e-76 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_018679682.1 | 2e-76 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_018679683.1 | 1e-76 | PREDICTED: TSL-kinase interacting protein 1 isoform X2 | ||||
Swissprot | Q8LJT8 | 1e-47 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A444D6D2 | 2e-80 | A0A444D6D2_ENSVE; Uncharacterized protein | ||||
TrEMBL | M0SAI6 | 2e-80 | M0SAI6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P00180_001 | 3e-81 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 4e-48 | TSL-kinase interacting protein 1 |