PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P22860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 322aa    MW: 35288.4 Da    PI: 6.775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P22860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10234277755
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++ ++RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  GSMUA_Achr2P22860_001 234 IAAKNRRERISERLKILQDLVPNG-----TKVDLVTMLEKAISYVKFLQ 277
                            6779******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-13225288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.653227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11232285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-11233281No hitNo description
SMARTSM003535.2E-12233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-7234277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALAKDRTRQ GPPACPLDGG GPSIQELRLP SSLELFGYLG DGSTLLRDGE RSSDSHGSYS  60
SSLLSFHSDP RNSDSCAYNM LGAVISPPQE SLSVVASQQS WGCFDTSVLS FDGHLNLDHE  120
EECAAWIDAM DRSYQPNHLD IKRGTADSRL IQEKDCFEVG SGNKRRGQDR FGFIYSGAAA  180
FDDLQESIGQ TTVLQKRSST NSCDVQSPKK QCGTPRRTKD KKSTSPSKDP QQSIAAKNRR  240
ERISERLKIL QDLVPNGTKV DLVTMLEKAI SYVKFLQLQV KVLATDELWP GQGGKPPDVG  300
QVKEAIDAIL SSHGDRNSQL RL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390410.10.0PREDICTED: transcription factor bHLH83-like
TrEMBLM0SAC70.0M0SAC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P22860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.18e-45ROOT HAIR DEFECTIVE6