PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P22640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 292aa    MW: 32831.9 Da    PI: 7.0737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P22640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172269148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd ll+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr2P22640_001 22 RGPWTLEEDTLLIHYIACHGEGRWNLLARCSGLRRTGKSCRLRWLNYL 69
                           89********************************************97 PP
2Myb_DNA-binding54.23.4e-1775118146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ ++eE++l++++++++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr2P22640_001  75 RGNLSPEEQLLIIELHAKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 118
                            7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6631769IPR017930Myb domain
SuperFamilySSF466891.48E-3019116IPR009057Homeodomain-like
SMARTSM007173.6E-142171IPR001005SANT/Myb domain
PfamPF002493.0E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-222376IPR009057Homeodomain-like
CDDcd001672.20E-112469No hitNo description
PROSITE profilePS5129426.27270124IPR017930Myb domain
SMARTSM007171.2E-1574122IPR001005SANT/Myb domain
PfamPF002493.8E-1675118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2477123IPR009057Homeodomain-like
CDDcd001671.10E-1279118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSEKRASSSS YDRIELGMEL RRGPWTLEED TLLIHYIACH GEGRWNLLAR CSGLRRTGKS  60
CRLRWLNYLK PDIKRGNLSP EEQLLIIELH AKWGNRWSRI AQHLPGRTDN EIKNYWRTRV  120
QKQARQLKID ADSTTFRDAV RCYLMPRLLE RTGSSQAAPS SLDAVSISAA TTAAADQAQQ  180
ASLHDISDAS MRYYEPPGAE IRSPSSSPCS TVLPRLPATM AEADVVTFDP FSSGYSMNDA  240
YDLDTWDIAL MSASLPSYAA SDYTVCNNNC GRNTGDSLWS MDELHDMLKK LT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25191244108B-MYB
1h8a_C1e-241612421128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390416.20.0PREDICTED: transcription factor MYB57
SwissprotQ9C9G73e-75MYB62_ARATH; Transcription factor MYB62
TrEMBLM0SAA50.0M0SAA5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P22640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.17e-77myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]