PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P21110_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 211aa MW: 23683.9 Da PI: 9.2579 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135 | 5.2e-42 | 15 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelv +yLk+kv +++l+ ++i+evd+ k++PwdLp++ + +e+ yfF r+ ++++ +r+n+a+ sg+Wkatg GSMUA_Achr2P21110_001 15 LPPGFRFHPTDEELVLQYLKRKVYSSPLPS-SIIPEVDLSKYNPWDLPACGGCGCEEVkYFFGLREARNPNRSRRNQAAGSGFWKATG 101 79**************************99.89***************75555555555***************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k+v+ + +++vg+kk+ vf++g+ p+ kt+W+mheyrl GSMUA_Achr2P21110_001 102 KEKPVTLSwCHRVVGMKKVSVFHRGKPPT--KTEWIMHEYRL 141 ******9999999**********999998..*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-49 | 11 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.71 | 15 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEKPRFTGN GVLRLPPGFR FHPTDEELVL QYLKRKVYSS PLPSSIIPEV DLSKYNPWDL 60 PACGGCGCEE VKYFFGLREA RNPNRSRRNQ AAGSGFWKAT GKEKPVTLSW CHRVVGMKKV 120 SVFHRGKPPT KTEWIMHEYR LAGPHATTTS DATHGTMAAR WDWVVCRVFK KKRAKIEIGE 180 DHRQESSCVT ELSDGSGDGE EASSGSMSLT P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-44 | 13 | 172 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390395.1 | 1e-157 | PREDICTED: NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 8e-60 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | M0S9V2 | 1e-156 | M0S9V2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P21110_001 | 1e-157 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 8e-62 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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