PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 554aa    MW: 62428.3 Da    PI: 6.2579
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.65e-27310364156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k +++WtpeLH++Fv++veqL G+++A+P++i+elmkv+gLt+++v+SHLQkYR++
  GSMUA_Achr2P18200_001 310 KMKVDWTPELHRQFVQVVEQL-GIDQAIPSKIVELMKVEGLTRHNVASHLQKYRMH 364
                            5689*****************.********************************96 PP
2Response_reg26.63e-10201261109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            +l+ d++   +   ++ le+ +y +v    + e+ale + ++   +++ ++ +  ++  G+  + e++   +++p iv+++    +++
  GSMUA_Achr2P18200_001  20 ILLLDKDAPSAVETKSKLEEMDY-VVSLYHNEEDALEAISKEAesFHVAIVEVTTSDNCGSFRFLEMA---KDIPTIVISDVHCLSTM 103
                            677888888888889999*****.***************777777*******8887754443333333...489************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             +++ +Ga +fl Kp+++++l++
  GSMUA_Achr2P18200_001 104 MKCIALGAAEFLQKPVSEDKLRN 126
                            ********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.1E-1416135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-1417156No hitNo description
SMARTSM004480.003718128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.51519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.59E-721131No hitNo description
PROSITE profilePS5129414.641307366IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-26308366IPR009057Homeodomain-like
SuperFamilySSF466895.64E-18309367IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24310364IPR006447Myb domain, plants
PfamPF002499.3E-7313362IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MAGSADGFVV WKDFPRGLKI LLLDKDAPSA VETKSKLEEM DYVVSLYHNE EDALEAISKE  60
AESFHVAIVE VTTSDNCGSF RFLEMAKDIP TIVISDVHCL STMMKCIALG AAEFLQKPVS  120
EDKLRNIWQH VVQKAFNAGG NELSKSLKPI KDTVVSMLQK QSETDEHKIK EKESEKDDKY  180
GCEKTMENDR FSAPSTPQLE QGGRFPTNGE FQEITHCSIA KELPQPGKHS SSVSKSVGNT  240
CDNSVSIANN KDVLPSKAEA EEEVNSIDGS KTDECSAVKE RFLPSHFHSV DDLQKNRLSY  300
SDGARNNRKK MKVDWTPELH RQFVQVVEQL GIDQAIPSKI VELMKVEGLT RHNVASHLQK  360
YRMHRRHVLP KDEDRRWQAD KDPTQRGYIP RPILAYPPYH TDCGAPTNQI YPFWVHPNYH  420
THGVGQAGYT RWHPPPQSWP WKTYPVVHAD AWGCPVFVTQ YGQYPMSSPL QRSLMYSDFD  480
TSGDSNEMFQ ESYDLHQVEE AIDRSIKDVM SKPWLPLPLG LKSPSAEVVL AELHRQGICA  540
IPPSTPSTDP HSCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-17315364655Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678069.10.0PREDICTED: two-component response regulator-like APRR2 isoform X3
TrEMBLM0S9110.0M0S911_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2076367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-117ARR-B family protein