PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P13410_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 243aa MW: 25278.3 Da PI: 7.8928 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00074 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cgk F + L H +H GSMUA_Achr2P13410_001 88 YKCSVCGKAFGSYQALGGHKTSH 110 9*********9998888887776 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.0007 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H r+H GSMUA_Achr2P13410_001 145 HQCSVCLKTFPSGQALGGHKRRH 167 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 9.1E-13 | 88 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.803 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.38E-9 | 88 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-4 | 88 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.38E-9 | 140 | 167 | No hit | No description |
PROSITE profile | PS50157 | 9.058 | 145 | 167 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-13 | 145 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.089 | 145 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAIEAVEIRT TASIPPPSAE MSDEELPHIE GWAKRKRSKR HRFFDHPPTE EEYLALCLVM 60 LARDGSGHRP PSLTSDSEAA PPPAKFQYKC SVCGKAFGSY QALGGHKTSH RKPTGGADEA 120 SVASTAASAS GSSTAGAASG GGRLHQCSVC LKTFPSGQAL GGHKRRHYEG SLGSSAAAVA 180 PATSEGASSS HRGLDLTVAA LPEFEFDGVR RCLAAAAAAT AAAEDEEVQS PLAFKKPRLL 240 IPT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009388925.1 | 1e-175 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | M0S7N2 | 1e-173 | M0S7N2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P13410_001 | 1e-174 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-49 | salt tolerance zinc finger |