PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P11010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 292aa MW: 32392.3 Da PI: 7.7437 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.5 | 1.2e-32 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWtpeLH++Fv+a+++LGG+ekAtPk +l+lm+v gLt++hvkSHLQ+YR+ GSMUA_Achr2P11010_001 19 PRMRWTPELHHCFVHAIQRLGGQEKATPKLVLQLMDVGGLTISHVKSHLQMYRS 72 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-31 | 15 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.64 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.88E-16 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-24 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGNCGRNGAV RQYIRSKVPR MRWTPELHHC FVHAIQRLGG QEKATPKLVL QLMDVGGLTI 60 SHVKSHLQMY RSTRNEGGKQ DLHERKHSNP GNDKVAGEQH GLGPCHASVP TEEFQSHLLY 120 SPLSPLKRIR LDTQTSSKGV QDLTVDTTPY SVDHYMQDLT VERGAKEGLS WQRETARAEN 180 HFSKLTAVRY MVDGCDPSKA TIRNDHYLMP ANKFITKQIC GNGCLSCKPP SHNNEYVESE 240 EANDCSLSLS LSLNSGAICA CSSSSSRDFT DHSSYSGGDR VNLDLSMSIC ET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018676977.1 | 0.0 | PREDICTED: uncharacterized protein LOC103976319 isoform X2 | ||||
TrEMBL | M0S6Z2 | 0.0 | M0S6Z2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P11010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-33 | G2-like family protein |