PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 587aa    MW: 66834.3 Da    PI: 6.7172
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-08520563344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                            +W++  +  l++a k ++++   +W+++a+ ++ g+t  qck ++
  GSMUA_Achr2P05590_001 520 AWSETQERALIQALKTFPKDvnqRWERVAAAVP-GKTMIQCKKKF 563
                            8********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.09E-2083176IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.7E-2194199IPR001623DnaJ domain
SMARTSM002717.2E-1497172IPR001623DnaJ domain
PfamPF002266.0E-1898177IPR001623DnaJ domain
CDDcd062572.92E-1398169IPR001623DnaJ domain
PROSITE profilePS5007618.12198180IPR001623DnaJ domain
PRINTSPR006258.0E-8103121IPR001623DnaJ domain
PRINTSPR006258.0E-8121136IPR001623DnaJ domain
PRINTSPR006258.0E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
SuperFamilySSF466892.08E-7393441IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-5393440IPR009057Homeodomain-like
PROSITE profilePS500906.249393436IPR017877Myb-like domain
SMARTSM007171.2E-5397450IPR001005SANT/Myb domain
CDDcd001678.47E-4400440No hitNo description
PROSITE profilePS5129310.341516571IPR017884SANT domain
SMARTSM007173.4E-8517569IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-6517563IPR009057Homeodomain-like
SuperFamilySSF466892.54E-9518564IPR009057Homeodomain-like
PfamPF002495.4E-7520563IPR001005SANT/Myb domain
CDDcd001671.97E-6520567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MGRHEGTLLL TYLAEIQNGE PLFFSSNSLP VKAYNFEPAG HAFHFAALKL LGLWDEEDAE  60
TDGQSVQSDD RGQEHLPSSD SYGSKGRKKS SAGSTQKDHY ALLGLGHLRF LATEDQIRKS  120
YRETALKHHP DKQAALILAE ETEEARQAKK DEIESHFKAI QEAYEVLIDP VKRRIYDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VSQPVPPLGD ENTSMEDVDS FYNFWYTFKS  240
WREFPHADEF DLEQAESRDH KRWMERQNAK LREKARKEEH ARVRALEKEK KLLRKERTRL  300
RTLSAQLVSE NLLDLSEDIV ESICMSFDLE QLKLLCDTME GKEKMERAKL LRDAQGGSSS  360
DVMKKGKTTS FQDLSLKPNG TVTDAKVGGP LSNYEKKERP WGKEEIEMLR KGMQKYPKGT  420
SRRWEVISEY IGTGRSVDEI LKATKTVLLR KPDSGKAFDS FLEKRKPVQT ISSPLSTRLE  480
TEALPVDGTH AASSRTSAGD QNPLEVQASN GVPAAVDQDA WSETQERALI QALKTFPKDV  540
NQRWERVAAA VPGKTMIQCK KKFALMKESF RSKRNTDQLF VFNLICF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1619428620112Zuotin
5dje_B2e-1619428620112Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594661.10.0dnaJ homolog subfamily C member 2-like
TrEMBLM0S5F00.0M0S5F0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-113DnaJ domain ;Myb-like DNA-binding domain