PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P02830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 315aa    MW: 33298.1 Da    PI: 5.0487
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P02830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.2e-17222255134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C +C   kTp+WR gp g+ktLCnaCG++y++ +
  GSMUA_Achr2P02830_001 222 CMHCEIQKTPQWRAGPMGPKTLCNACGVRYKSGR 255
                            99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.897216252IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-15216266IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14220253IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.42E-14220279No hitNo description
CDDcd002021.12E-13221278No hitNo description
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
PfamPF003201.0E-14222255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGDLFEHIDD LLDFPDDVLG LVEPCNQSAH LFLPAATVPA SADGLLGGVG EDSLDGSSGR  60
SNKSGAPFSA AEDKLGPCDE LDVLQLEWMS KFLDDSDSFP LDLPSCNAVT NNGNDENSDA  120
QPKAKAHSFF RTSSPVSVLE DNTRGSGGSD SSSSSSSSSS WTSASYCKDA KVLLPPISPP  180
EAPSVMASCP PPPPPKKKNS QKTPAATADG DESGSPPPVR KCMHCEIQKT PQWRAGPMGP  240
KTLCNACGVR YKSGRLFPEY RPAASPTFLP SIHSNSHKKV VEMRIKASQK VAPAGAAMSS  300
SSDGCDLLEY IRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382468.10.0PREDICTED: GATA transcription factor 4-like isoform X2
RefseqXP_018678088.10.0PREDICTED: GATA transcription factor 8-like isoform X1
TrEMBLM0S4M40.0M0S4M4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P02830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-40GATA family protein