PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P28110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 497aa    MW: 55143.2 Da    PI: 6.8058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P28110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13337383455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr1P28110_001 337 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYITELQ 383
                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4753232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.384333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-20336400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.25E-15336387No hitNo description
PfamPF000101.0E-10337383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-19337396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-17339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MRWKTGMGSP WSEEDRAMAV EVLGGRALDY LLAASHASSS DQLATVGSGV PDLQIKLQNL  60
VEARGSPWAC AVFWQISRSR FGEFVLGWGD GHCRELGGRA DDDDPRGRTT LQRMRKRVLE  120
RLHVLSGGSD DENYALRLDQ VADPEMYFLA SMYFSFAPGE GAPGRSLLSQ KHLWIPESAF  180
AGADYFVRAS LARTAGFRTV VLVPFDTGVL ELASMDSVSE SPDELQRIKA VFIFGKDLNA  240
APAQMNMKET VMSQFQSQKQ HQHQQQQPRP RAQPKQIDFG GSSTSSRAMP IGRLESLEFV  300
LSDAEASRNG EKPGTTEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRSVV  360
PNISKMDKAS LLGDAISYIT ELQRKLKEME AEREMLGEPA SMEQNSRTHP PQIDVDSLHD  420
ELLVRVSCPL ATHPIAGVIQ AFGDSQIDVV DSKVVVSDDK VTHTFVVRSP GAEQLTKEKL  480
VAAMSHEVGT KSQSTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-28331393264Transcription factor MYC2
5gnj_B3e-28331393264Transcription factor MYC2
5gnj_E3e-28331393264Transcription factor MYC2
5gnj_F3e-28331393264Transcription factor MYC2
5gnj_G3e-28331393264Transcription factor MYC2
5gnj_I3e-28331393264Transcription factor MYC2
5gnj_M3e-28331393264Transcription factor MYC2
5gnj_N3e-28331393264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318326RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420928.20.0PREDICTED: transcription factor bHLH13-like
TrEMBLM0S3R80.0M0S3R8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P28110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-85bHLH family protein