PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P25120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 360aa    MW: 39779.6 Da    PI: 6.4161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P25120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ ++++G g+W++++   g+ R++k+c++rw +yl
  GSMUA_Achr1P25120_001 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPIQAGLQRCGKSCRLRWINYL 61
                           678*******************************************97 PP
2Myb_DNA-binding48.91.6e-1567110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+++++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr1P25120_001  67 RGSFSKQEENLIIELHAVLGNR-WSQIAARLP-GRTDNEIKNFWNS 110
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-27564IPR009057Homeodomain-like
PROSITE profilePS5129425.055965IPR017930Myb domain
SuperFamilySSF466895.62E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002496.5E-151461IPR001005SANT/Myb domain
CDDcd001671.51E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.70466116IPR017930Myb domain
PfamPF002491.2E-1467110IPR001005SANT/Myb domain
CDDcd001672.46E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRHTCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PIQAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SKQEENLIIE LHAVLGNRWS QIAARLPGRT DNEIKNFWNS CIKKMLKQRG  120
IDPNTHKPLA EDKVGEAKAS RTSEGTSGSV DLKVPAAALE SLNDAARGPA SDPVSVFPLA  180
QLSFATDCSS SETALADLSA CPNPLWLSHN IPTTILSTSM DNSAQICAGI DGMQYSDAVY  240
SGNSSRSSMN SSDTVEMQNS SSFHNDIFLW PESTPDKDAQ VQFEKEPEDL KWSQYLDGAF  300
PVSAATQSQS LSQPLHCDVK AESPSVFSDL VSWHQIQQQL QSSDIYGKDF QMLSVGFGQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29121145106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416642.10.0PREDICTED: transcription factor MYB86-like
TrEMBLM0S2W90.0M0S2W9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P25120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.18e-99myb domain protein 61