PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P20040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 782aa    MW: 87433.5 Da    PI: 5.9882
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P20040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23145246199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F
  GSMUA_Achr1P20040_001 145 FCKILTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLF 231
                            99*********************999*****9555555.49*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++ +l+++v+r+
  GSMUA_Achr1P20040_001 232 I--RDEKSQLLLGVRRA 246
                            *..45677789999997 PP
2Auxin_resp121.65.8e-40271353183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+YnPra++seF++++ k++ka +++vs+GmRf m+fete+ss+rr++Gt+vg+sd+dpvrWpnS+Wr+L+
  GSMUA_Achr1P20040_001 271 AAHAAANRSPFTVYYNPRACPSEFIIPLTKYHKAAYTQVSIGMRFGMMFETEESSKRRYMGTIVGISDYDPVRWPNSRWRNLQ 353
                            79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-44136274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-39139259IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-21144245No hitNo description
SMARTSM010192.7E-23145247IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858145247IPR003340B3 DNA binding domain
PfamPF023622.6E-21145246IPR003340B3 DNA binding domain
PfamPF065074.4E-36271353IPR010525Auxin response factor
PROSITE profilePS5174519.971681766IPR000270PB1 domain
PfamPF023091.5E-9695770IPR033389AUX/IAA domain
SuperFamilySSF542776.54E-8701761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MSSVQANVRA AGLNSAAALL DEMKLLGEVP SKPSARKVLN SELWHACAGP LVSLPQPGSL  60
VYYFPQGHSE QVTASTRKIA NSQIPAYTDL PSQLMCQVHN VTLHADKETD EIYAQMTLQP  120
VTSENDVFPI PDLGHTRCKH PTEFFCKILT ASDTSTHGGF SVPRRAAEKL FPQLDYSMQP  180
PNQELIVRDL HDNLWTFRHI YRGQPKRHLL TTGWSLFVGA KRLKAGDSVL FIRDEKSQLL  240
LGVRRANRKQ TALTSSVLST DSMHIGVLAA AAHAAANRSP FTVYYNPRAC PSEFIIPLTK  300
YHKAAYTQVS IGMRFGMMFE TEESSKRRYM GTIVGISDYD PVRWPNSRWR NLQVEWDEHG  360
YGERPDRVSL WEIETPESLF AFPNVTSSLK RQCLPGYVGD AILVSKDSDN VKVWLLSSKM  420
HSTKISLTNQ KNLLRLLNKP CNPNRDGLLA HHQSIYASIL QNVRNNFVSG TQVKSQVSDR  480
EEARPAEHEQ NFQDHNTRGE NGINLQGMKE QSDHKLVQQQ NDPSRTQSPG LHAAQSSDMC  540
NLNYLLPHQD CSHPILDNDD WMTQHSCLQS FMDISSMANP NSFEPTETFQ LSCISDSGTP  600
QRITTDIQEF LGTQLNSLDD ELLVQGILSS ESNNQGETIS NLRFDPSNES MDMGHVPGVA  660
IDGLSPIGSS SKLSFLLISD AIYVEQVQKV GSVGRSIDVT RFSNYCELRS AVACMFGLEG  720
QLDDPRGSEW KLVYVDYEND VLLVGDDPWE EFISCVKCIR ILSPSEVQQM SQEGMQLMDG  780
FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01537829392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681292.10.0PREDICTED: auxin response factor 11
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM0S1G20.0M0S1G2_MUSAM; Auxin response factor
STRINGGSMUA_Achr1P20040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]