PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P18910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 394aa    MW: 43149 Da    PI: 6.3276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P18910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13252297454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  GSMUA_Achr1P18910_001 252 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKEL 297
                            799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-3822184IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.15E-15246302No hitNo description
PROSITE profilePS5088817.447248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18249315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18252316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-11252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MLLLQQDSKA YTVIDAVTTA ALQHRLQCLL GSRPEWWTYA IFWRASPDHH LLAFGDGHFR  60
GNRELDGRRV PPRSGSGGGV HAVLIDEACT DGDDAEWFYV VSLTRCFAAG EAAVPARVYG  120
TLALVWLTGA HALQTCGCDR TREAQLHGIE TIVCVPVAGG VLELGSSELV GENWVLVQQA  180
KAIFSVPDDE ADAGLAPVVT LPSPVSKKEV SGPSMSVDTE QFSDSEGGQT VEGLRGKKRG  240
RKPGSRRETP VNHVEAERQR REKLNHRFYA LRSVVPNVSR MDKASLLADA VSYIKELKSK  300
LEDLEADSKR AKKEINVEVK SLGPDAMIRV QTENVSHPTA KLMEVLRELE LQVHHASVSS  360
VKEVMLHDVV VRVPDGLQAE DSLRDALLTK LETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-25211868194Transcription factor MYC3
4rqw_B1e-25211868194Transcription factor MYC3
4rs9_A1e-25211868194Transcription factor MYC3
4yz6_A1e-25211868194Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412473.10.0PREDICTED: transcription factor MYC3-like
TrEMBLM0S1490.0M0S149_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P18910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-71bHLH family protein