PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P15640_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 345aa MW: 38430.7 Da PI: 6.1802

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P15640_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53.1	6.8e-17	74	123	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr rr+++NRe+ArrsR+RK+a ++ Le v++L +eN++L k+l ++ GSMUA_Achr1P15640_001 74 KRIRRMASNRESARRSRKRKQAHLADLELQVDQLRGENESLFKQLTDASD 123 9****************************************987765555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.9E-15	70	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.289	72	124	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-12	74	125	No hit	No description
Pfam	PF00170	1.1E-14	74	124	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.4E-13	74	126	No hit	No description
CDD	cd14702	8.20E-21	75	125	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.9E-22	141	252	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MKKAAHCYEE DFKLKFLLLL FNSILAETPT SSHKPTAKVS QTLGGTSGSE QSDEESLETE 60 GGQYEQSTDV IDNKRIRRMA SNRESARRSR KRKQAHLADL ELQVDQLRGE NESLFKQLTD 120 ASDEFTEAVT NHRILKSNVE ALRIKVKMAE DLVTGGALAC GLDHLLQTNI GSPQFLNPQQ 180 PSRASPDFLS AIQVQADDPG YVGTPCAGQF QNTGMGNNDA ENADILPGLN QTSPLQSITN 240 MDNHRIRIPR EVSDCRFNWI HGSVDLNLSM LSPTRMTRIR VLTLCVFDLD PMWSCCVLTL 300 ITLLVSLISH KELSFIDGIL KNCHLVVLVV ITQIISCELV QHKSW

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MKKAAHCYEE DFKLKFLLLL FNSILAETPT SSHKPTAKVS QTLGGTSGSE QSDEESLETE  60
GGQYEQSTDV IDNKRIRRMA SNRESARRSR KRKQAHLADL ELQVDQLRGE NESLFKQLTD  120
ASDEFTEAVT NHRILKSNVE ALRIKVKMAE DLVTGGALAC GLDHLLQTNI GSPQFLNPQQ  180
PSRASPDFLS AIQVQADDPG YVGTPCAGQF QNTGMGNNDA ENADILPGLN QTSPLQSITN  240
MDNHRIRIPR EVSDCRFNWI HGSVDLNLSM LSPTRMTRIR VLTLCVFDLD PMWSCCVLTL  300
ITLLVSLISH KELSFIDGIL KNCHLVVLVV ITQIISCELV QHKSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	RRSRKRK
2	86	93	RRSRKRKQ
3	88	93	SRKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269\|PubMed:11133985}.
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400629.1	1e-165	PREDICTED: basic leucine zipper 9 isoform X2
Swissprot	Q6ETX0	3e-64	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
Swissprot	Q6H500	3e-64	RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBL	M0S072	0.0	M0S072_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P15640_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-49	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]