PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P14780_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 126aa MW: 13214.3 Da PI: 9.2214 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.8 | 9.9e-21 | 13 | 47 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+g+ GSMUA_Achr1P14780_001 13 CADCRTTKTPLWRAGPSGPKSLCNACGIRYRKNGR 47 ********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.6E-20 | 7 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.2E-18 | 11 | 57 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.57E-14 | 11 | 57 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 13 | 38 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 7.22E-17 | 13 | 59 | No hit | No description |
Pfam | PF00320 | 1.9E-18 | 13 | 47 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 15.433 | 13 | 62 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MDASSSDCQL KCCADCRTTK TPLWRAGPSG PKSLCNACGI RYRKNGRALP VSKKKKVEIG 60 SGGGEGFGGV FQASEAGVGF AGARTMIQKQ RRRGMLGEEE AAVSAGFLYA PCSESLAVSM 120 LCMLVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406488.1 | 4e-75 | PREDICTED: GATA transcription factor 16-like | ||||
TrEMBL | M0RZY6 | 8e-86 | M0RZY6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P14780_001 | 1e-86 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 1e-18 | GATA transcription factor 23 |