PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P09750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 297aa    MW: 32605.6 Da    PI: 8.4105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P09750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181762147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W++eEd  l ++v+++G+++W++I+r ++ gR++k+c++rw + 
  GSMUA_Achr1P09750_001 17 KGPWSPEEDTSLQRLVQRHGPRNWSLISRSIP-GRSGKSCRLRWCNQ 62
                           79******************************.***********985 PP
2Myb_DNA-binding54.72.4e-1771113347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+eEde++++a++++G++ W+tIar +  gRt++ +k++w++ 
  GSMUA_Achr1P09750_001  71 PFTAEEDEIIIRAHRRFGNK-WATIARILS-GRTDNAIKNHWNST 113
                            89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3751263IPR017930Myb domain
SuperFamilySSF466892.51E-3115110IPR009057Homeodomain-like
SMARTSM007172.3E-151665IPR001005SANT/Myb domain
PfamPF002494.7E-181762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-261870IPR009057Homeodomain-like
CDDcd001676.17E-151961No hitNo description
PROSITE profilePS5129423.80464118IPR017930Myb domain
SMARTSM007174.6E-1568116IPR001005SANT/Myb domain
CDDcd001671.22E-1271114No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2371117IPR009057Homeodomain-like
PfamPF002493.3E-1471113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAAATGRSRC KEAARIKGPW SPEEDTSLQR LVQRHGPRNW SLISRSIPGR SGKSCRLRWC  60
NQLSPQVEHR PFTAEEDEII IRAHRRFGNK WATIARILSG RTDNAIKNHW NSTLKRKYTP  120
PCAGSGDGGL QHHYDAIRAS SDGPVLLSGG AGLWMNPGSP SESDVSDSSH HSHPTEPMTA  180
ATIAATPIHD DDDPVTSLTL SLPGSDPMDT SSDHHHHHQG SPRRPAVAAS SAAEEERRPT  240
PIPFSAEFLA VMQEMIRKEV RCYMAGLEQS RMLCGMQPPP EGVRNAAMNR IGVTKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40161173104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-391611757158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-391611757158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-40161173104C-Myb DNA-Binding Domain
1msf_C2e-40161173104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-88CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396365.11e-180PREDICTED: transcription factor MYB44-like
SwissprotO231607e-84MYB73_ARATH; Transcription factor MYB73
TrEMBLM0RYI40.0M0RYI4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P09750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-70myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]