PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P08980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 340aa    MW: 35518.8 Da    PI: 5.2202
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P08980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17248281134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C++C   kTp+WR gp g+ktLCnaCG++yr+ +
  GSMUA_Achr1P08980_001 248 CTHCEIQKTPQWRAGPMGPKTLCNACGVRYRSGR 281
                            *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.1E-16242292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.82242278IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15244305No hitNo description
Gene3DG3DSA:3.30.50.103.7E-14246279IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.86E-12247294No hitNo description
PfamPF003202.6E-15248281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEDGMGDLFD YIDDLLDDDD VMALVEHCDD AAAALLLPPL PLVPVAAPVT AADGGLDSLD  60
CSGDHNAELD VVQLEWMPKF LYDSDAFSLD LPSCDAIAND ADDNGAQTKA RGDSFVSALG  120
ANATGGGDTP ASSSSCSTSA SYFGGGNSAR AMLPPVGPPE LPPVIPTRAR SKRQRRSTLM  180
PQPPSSDVVA APHPLSVASD SDPESFGESC PPPPPPKKKK KKSKKKGPGA TAAAEGDEPG  240
SPPPGRKCTH CEIQKTPQWR AGPMGPKTLC NACGVRYRSG RLFPEYRPAG SPTFVPSLHS  300
NSHKKVVEMR NKASHSTAAP GASAPSSDGC DLLGYMRRKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216224KKKKKKSKK
2216225KKKKKKSKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392221.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLM0RYA70.0M0RYA7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P08980_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-38GATA family protein