PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P08440_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SBP | ||||||||
Protein Properties | Length: 187aa MW: 20816.9 Da PI: 9.9132 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.1 | 1.9e-41 | 74 | 151 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl+eak+yhrrhkvCe+hska+vv+v+g +qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk+++ GSMUA_Achr1P08440_001 74 CCQAENCTADLTEAKRYHRRHKVCEAHSKAAVVMVAGFRQRFCQQCSRFHELAEFDDSKRSCRRRLAGHNERRRKSSS 151 6**************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-34 | 67 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.3 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-38 | 73 | 153 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.6E-32 | 75 | 148 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MEHRRPSTEP SRKSTKEKTR KDTAVATGND EDEEEQEEAA AEADKKRRPP SSSSSAARRG 60 VSGGGGGGGA PQPCCQAENC TADLTEAKRY HRRHKVCEAH SKAAVVMVAG FRQRFCQQCS 120 RFHELAEFDD SKRSCRRRLA GHNERRRKSS SDAQAGEGSN RCRQADQDGR MQISLPGKPT 180 YKHFQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-37 | 65 | 148 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392815.1 | 1e-135 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q6Z461 | 9e-43 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | M0RY52 | 1e-133 | M0RY52_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P08440_001 | 1e-134 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 1e-43 | squamosa promoter binding protein-like 4 |