PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P07220_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 600aa MW: 65133.4 Da PI: 9.1687

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P07220_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	226	270	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+e++++a+k++G W++I +++g ++++ q++s+ qk+ GSMUA_Achr1P07220_001 226 RERWTEEEHEKFLEAIKLHGRV-WHRIQEHIG-TKSAIQIRSHAQKF 270 78****************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-14	220	275	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.647	221	275	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-13	224	273	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.8E-9	225	266	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	225	273	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-13	226	269	IPR001005	SANT/Myb domain
CDD	cd00167	4.52E-11	228	271	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MNDPSQLMNR SFGIWPPPVA EESMGFPNPV PPPPPFAAPG GVKPGRTNWK AKKAADMRKK 60 AATISGGVGA GVPLGGGGGA GAGVSGYRPP TLHELQFQNR VKARRFYPKK KFLRSAPFAP 120 RNTTSFIIRA KKSGGIASLV SPCPVTPAVL PTPRFSPTRE DLADMVKEEW GVDGYGSMKG 180 LIRLRSPSGH EIRPAAATGG GEEDVEDEEG SSESDVRKPY TITKQRERWT EEEHEKFLEA 240 IKLHGRVWHR IQEHIGTKSA IQIRSHAQKF FSKVDRNWGT GNAIEIPPPR PKRKPLHPYP 300 RKLENLCTTR VPDTKRPEQS SSPIPSFSEQ ESGSPVSVLS AVGSETSPLS SVVGSDPVEL 360 SLSEPENRCC SPTSSVEGEE RILSKDPASN DQIHPKECSP VEPQLTSLKL FGRTVLVANS 420 QKTCSSDDGN SQKTCSSDDG NATRCFMSGK TGRIPCDVAA LSMYYFLAPD GVQKNSADEM 480 VAPMPFWPTF YGSLPISFTN QLNTRLKQDL PQTSTEAPSQ TIAIEEGSSV GSNSPSAWNE 540 SLMDDGNHTA VGYDGSGFPK EHMRAFKLKP SENSAFISVK ASKIKSTRGF VPYERCKIGK

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MNDPSQLMNR SFGIWPPPVA EESMGFPNPV PPPPPFAAPG GVKPGRTNWK AKKAADMRKK  60
AATISGGVGA GVPLGGGGGA GAGVSGYRPP TLHELQFQNR VKARRFYPKK KFLRSAPFAP  120
RNTTSFIIRA KKSGGIASLV SPCPVTPAVL PTPRFSPTRE DLADMVKEEW GVDGYGSMKG  180
LIRLRSPSGH EIRPAAATGG GEEDVEDEEG SSESDVRKPY TITKQRERWT EEEHEKFLEA  240
IKLHGRVWHR IQEHIGTKSA IQIRSHAQKF FSKVDRNWGT GNAIEIPPPR PKRKPLHPYP  300
RKLENLCTTR VPDTKRPEQS SSPIPSFSEQ ESGSPVSVLS AVGSETSPLS SVVGSDPVEL  360
SLSEPENRCC SPTSSVEGEE RILSKDPASN DQIHPKECSP VEPQLTSLKL FGRTVLVANS  420
QKTCSSDDGN SQKTCSSDDG NATRCFMSGK TGRIPCDVAA LSMYYFLAPD GVQKNSADEM  480
VAPMPFWPTF YGSLPISFTN QLNTRLKQDL PQTSTEAPSQ TIAIEEGSSV GSNSPSAWNE  540
SLMDDGNHTA VGYDGSGFPK EHMRAFKLKP SENSAFISVK ASKIKSTRGF VPYERCKIGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394111.1	0.0	PREDICTED: protein REVEILLE 1
TrEMBL	M0RXT0	0.0	M0RXT0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P07220_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7783	36	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-39	MYB_related family protein